New developments in RiPP discovery, enzymology and engineering

M Montalbán-López, TA Scott, S Ramesh… - Natural product …, 2021 - pubs.rsc.org
Covering: up to June 2020 Ribosomally-synthesized and post-translationally modified
peptides (RiPPs) are a large group of natural products. A community-driven review in 2013 …

Genome mining as new challenge in natural products discovery

L Albarano, R Esposito, N Ruocco, M Costantini - Marine drugs, 2020 - mdpi.com
Drug discovery is based on bioactivity screening of natural sources, traditionally represented
by bacteria fungi and plants. Bioactive natural products and their secondary metabolites …

The IMG/M data management and analysis system v. 7: content updates and new features

IMA Chen, K Chu, K Palaniappan, A Ratner… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img. jgi.
doe. gov/m/) at the Department of Energy (DOE) Joint Genome Institute (JGI) continues to …

The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities

IMA Chen, K Chu, K Palaniappan, A Ratner… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Integrated Microbial Genomes & Microbiomes system (IMG/M: https://img. jgi.
doe. gov/m/) contains annotated isolate genome and metagenome datasets sequenced at …

MIBiG 2.0: a repository for biosynthetic gene clusters of known function

SA Kautsar, K Blin, S Shaw… - Nucleic acids …, 2020 - academic.oup.com
Fueled by the explosion of (meta) genomic data, genome mining of specialized metabolites
has become a major technology for drug discovery and studying microbiome ecology. In …

IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes

IMA Chen, K Chu, K Palaniappan, M Pillay… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Integrated Microbial Genomes & Microbiomes system v. 5.0 (IMG/M: https://img.
jgi. doe. gov/m/) contains annotated datasets categorized into: archaea, bacteria, eukarya …

Fungal secondary metabolites in food and pharmaceuticals in the era of multi-omics

A Shankar, KK Sharma - Applied Microbiology and Biotechnology, 2022 - Springer
Fungi produce several bioactive metabolites, pigments, dyes, antioxidants, polysaccharides,
and industrial enzymes. Fungal products are also the primary sources of functional food and …

Microbial chassis development for natural product biosynthesis

X Xu, Y Liu, G Du, R Ledesma-Amaro, L Liu - Trends in biotechnology, 2020 - cell.com
Engineering microbial cells to efficiently synthesize high-value-added natural products has
received increasing attention in recent years. In this review, we describe the pipeline to build …

[HTML][HTML] Antibiotic resistance: Global health crisis and metagenomics

S Yadav, A Kapley - Biotechnology Reports, 2021 - Elsevier
Antibiotic resistance is a global problem which affects human health. The imprudent use of
antibiotics (medicine, agriculture, aquaculture, and food industry) has resulted in the broader …

IMG-ABC v. 5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase

K Palaniappan, IMA Chen, K Chu, A Ratner… - Nucleic acids …, 2020 - academic.oup.com
Microbial secondary metabolism is a reservoir of bioactive compounds of immense
biotechnological and biomedical potential. The biosynthetic machinery responsible for the …