Polymer translocation: the first two decades and the recent diversification
Probably no other field of statistical physics at the borderline of soft matter and biological
physics has caused such a flurry of papers as polymer translocation since the 1994 …
physics has caused such a flurry of papers as polymer translocation since the 1994 …
Polymer translocation and nanopore sequencing: a review of advances and challenges
Various biological processes involve the translocation of macromolecules across
nanopores; these pores are basically protein channels embedded in membranes …
nanopores; these pores are basically protein channels embedded in membranes …
Dynamics of driven polymer transport through a nanopore
The transport of polymers across nanoscale pores underpins many biological processes,
such as the ejection of bacteriophage DNA into a host cell and the transfer of genes …
such as the ejection of bacteriophage DNA into a host cell and the transfer of genes …
Unifying model of driven polymer translocation
T Ikonen, A Bhattacharya, T Ala-Nissila, W Sung - Physical Review E …, 2012 - APS
We present a Brownian dynamics model of driven polymer translocation, in which
nonequilibrium memory effects arising from tension propagation (TP) along the cis side …
nonequilibrium memory effects arising from tension propagation (TP) along the cis side …
Physics of base-pairing dynamics in DNA
M Manghi, N Destainville - Physics Reports, 2016 - Elsevier
As a key molecule of life, Deoxyribo-Nucleic Acid (DNA) is the focus of numbers of
investigations with the help of biological, chemical and physical techniques. From a physical …
investigations with the help of biological, chemical and physical techniques. From a physical …
Influence of non-universal effects on dynamical scaling in driven polymer translocation
T Ikonen, A Bhattacharya, T Ala-Nissila… - The Journal of chemical …, 2012 - pubs.aip.org
We study the dynamics of driven polymer translocation using both molecular dynamics (MD)
simulations and a theoretical model based on the non-equilibrium tension propagation on …
simulations and a theoretical model based on the non-equilibrium tension propagation on …
Iso-flux tension propagation theory of driven polymer translocation: The role of initial configurations
J Sarabadani, T Ikonen, T Ala-Nissila - The Journal of Chemical …, 2014 - pubs.aip.org
We investigate the dynamics of pore-driven polymer translocation by theoretical analysis
and molecular dynamics (MD) simulations. Using the tension propagation theory within the …
and molecular dynamics (MD) simulations. Using the tension propagation theory within the …
Theory of pore-driven and end-pulled polymer translocation dynamics through a nanopore: An overview
J Sarabadani, T Ala-Nissila - Journal of Physics: Condensed …, 2018 - iopscience.iop.org
We review recent progress on the theory of dynamics of polymer translocation through a
nanopore based on the iso-flux tension propagation (IFTP) theory. We investigate both pore …
nanopore based on the iso-flux tension propagation (IFTP) theory. We investigate both pore …
Process time distribution of driven polymer transport
T Saito, T Sakaue - Physical Review E—Statistical, Nonlinear, and Soft …, 2012 - APS
We discuss the temporal distribution of dynamic processes in driven polymer transport
inherent to flexible chains due to stochastic tension propagation. The stochasticity originates …
inherent to flexible chains due to stochastic tension propagation. The stochasticity originates …
Through the eye of the needle: recent advances in understanding biopolymer translocation
D Panja, GT Barkema… - Journal of Physics …, 2013 - iopscience.iop.org
In recent years polymer translocation, ie, transport of polymeric molecules through
nanometer-sized pores and channels embedded in membranes, has witnessed strong …
nanometer-sized pores and channels embedded in membranes, has witnessed strong …