Automatic root length estimation from images acquired in situ without segmentation

F Khoroshevsky, K Zhou, S Chemweno, Y Edan… - Plant …, 2024 - spj.science.org
Image-based root phenotyping technologies, including the minirhizotron (MR), have
expanded our understanding of the in situ root responses to changing environmental …

Temperature and moisture dependence of daily growth of Scots pine (Pinus sylvestris L.) roots in Southern Finland

Y Ding, P Schiestl-Aalto, HS Helmisaari… - Tree …, 2020 - academic.oup.com
Scots pine (Pinus sylvestris L.) is one of the most important conifers in Northern Europe. In
boreal forests, over one-third of net primary production is allocated to roots. Pioneer roots …

Evaluation of spatial and temporal variation in fine root dynamics in a temperate mixed forest using a scanner method

N Kuwabe, M Ohashi - Journal of Forest Research, 2023 - Taylor & Francis
Understanding fine root phenology at the stand scale is crucial for elucidating how carbon
and nutrient cycling in forest systems respond to climate change. This study aimed to reveal …

Phenology of fine root and shoot using high frequency temporal resolution images in a temperate larch forest

A Tamura, H Oguma, R Fujimoto, M Kuribayashi… - Rhizosphere, 2022 - Elsevier
Understanding tree phenology reveals the underlying mechanisms through plant functional
and productive activities and carbon sinks in forest ecosystems. However, previous research …

[HTML][HTML] Response of grass covers for dikes to coastal stressors during establishment phase

J Michalzik, M Paul, T Schlurmann - Ecological Engineering, 2025 - Elsevier
Grass covers on dikes are subjected to a multitude of controlled and uncontrolled
environmental stressors that can affect its vegetation development. Controlled stresses are …

A root auto tracing and analysis (ARATA): An automatic analysis software for detecting fine roots in images from flatbed optical scanners

A Yabuki, H Ikeno, M Dannoura - Methods in Ecology and …, 2022 - Wiley Online Library
Buried scanners are often used to study fine root dynamics by continuously observing them
from the images taken at a fixed point. Accordingly, software have been developed to …

Inconsistent interannual variations between net primary production and soil CO2 effluxes in a Moso bamboo forest

T Kume, PH Lin, M Orrego, MH Chung… - Journal of Forest …, 2024 - Taylor & Francis
Understanding the link between interannual variations in net primary production (NPP) and
soil CO2 efflux (Rs) is essential for evaluating carbon dynamics in forest ecosystems …

An improved method for quantifying total fine root decomposition in plantation forests combining measurements of soil coring and minirhizotrons with a mass balance …

X Li, KJ Minick, T Li, JC Williamson, M Gavazzi… - Tree …, 2020 - academic.oup.com
Accurate measurement of total fine root decomposition (the amount of dead fine roots
decomposed per unit soil volume) is essential for constructing a soil carbon budget …

TManual: Assistant for manually measuring length development in structures built by animals

N Mizumoto - Ecology and Evolution, 2023 - Wiley Online Library
Structures built by animals are extended phenotypes, and animal behavior can be better
understood by recording the temporal development of structure construction. For most …

Spatial and temporal patterns of root dynamics in a Bornean tropical rainforest monitored using the root scanner method

I Endo, T Kume, LK Kho, A Katayama, N Makita… - Plant and Soil, 2019 - Springer
Aims Root phenology patterns in tropical regions are poorly understood because limited
data are available. Using the root scanner method, the aims of this study were to clarify 1) …