BANNER: an executable survey of advances in biomedical named entity recognition

R Leaman, G Gonzalez - Biocomputing 2008, 2008 - World Scientific
There has been an increasing amount of research on biomedical named entity recognition,
the most basic text extraction problem, resulting in significant progress by different research …

[HTML][HTML] A comprehensive review on feature set used for anaphora resolution

K Lata, P Singh, K Dutta - Artificial Intelligence Review, 2021 - Springer
Abstract In linguistics, the Anaphora Resolution (AR) is the method of identifying the
antecedent for anaphora. In simple terms, this is the problem that helps to solve what the …

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles

KB Cohen, A Lanfranchi, MJ Choi, M Bada… - BMC …, 2017 - Springer
Background Coreference resolution is the task of finding strings in text that have the same
referent as other strings. Failures of coreference resolution are a common cause of false …

[HTML][HTML] Evolution of the Sequence Ontology terms and relationships

CJ Mungall, C Batchelor, K Eilbeck - Journal of biomedical informatics, 2011 - Elsevier
The Sequence Ontology is an established ontology, with a large user community, for the
purpose of genomic annotation. We are reforming the ontology to provide better terms and …

[PDF][PDF] Learning a named entity tagger from gazetteers with the partial perceptron.

A Carlson, S Gaffney, F Vasile - … : Learning by Reading and Learning to …, 2009 - cdn.aaai.org
While gazetteers can be used to perform named entity recognition through lookup-based
methods, ambiguity and incomplete gazetteers lead to relatively low recall. A sequence …

[PDF][PDF] Bootstrapping and evaluating named entity recognition in the biomedical domain

A Vlachos, C Gasperin - Proceedings of the HLT-NAACL BioNLP …, 2006 - aclanthology.org
We demonstrate that bootstrapping a gene name recognizer for FlyBase curation from
automatically annotated noisy text is more effective than fully supervised training of the …

Statistical anaphora resolution in biomedical texts

CV Gasperin - 2009 - cl.cam.ac.uk
This thesis presents a study of anaphora in biomedical scientific literature and focuses on
tackling the problem of anaphora resolution in this domain. Biomedical literature has been …

Integrating natural language processing with FlyBase curation

N Karamanis, I Lewin, R Seal, R Drysdale… - Biocomputing …, 2007 - World Scientific
Abstract Applying Natural Language Processing techniques to biomedical text as a potential
aid to curation has become the focus of intensive research. However, developing integrated …

An introduction to tag sequence grammars and the RASP system parser

T Briscoe - 2006 - cl.cam.ac.uk
This report describes the tag sequence grammars released as part of the Robust Accurate
Statistical Parsing (RASP) system. It is intended to help users of RASP understand the …

[PDF][PDF] Annotation of anaphoric relations in biomedical full-text articles using a domain-relevant scheme

C Gasperin, N Karamanis, R Seal - Proceedings of DAARC, 2007 - Citeseer
Biomedical literature has been the focus of relevant information extraction projects, however
there is no corpus of full scientific articles annotated with anaphoric links for training and …