BANNER: an executable survey of advances in biomedical named entity recognition
R Leaman, G Gonzalez - Biocomputing 2008, 2008 - World Scientific
There has been an increasing amount of research on biomedical named entity recognition,
the most basic text extraction problem, resulting in significant progress by different research …
the most basic text extraction problem, resulting in significant progress by different research …
[HTML][HTML] A comprehensive review on feature set used for anaphora resolution
Abstract In linguistics, the Anaphora Resolution (AR) is the method of identifying the
antecedent for anaphora. In simple terms, this is the problem that helps to solve what the …
antecedent for anaphora. In simple terms, this is the problem that helps to solve what the …
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles
Background Coreference resolution is the task of finding strings in text that have the same
referent as other strings. Failures of coreference resolution are a common cause of false …
referent as other strings. Failures of coreference resolution are a common cause of false …
[HTML][HTML] Evolution of the Sequence Ontology terms and relationships
The Sequence Ontology is an established ontology, with a large user community, for the
purpose of genomic annotation. We are reforming the ontology to provide better terms and …
purpose of genomic annotation. We are reforming the ontology to provide better terms and …
[PDF][PDF] Learning a named entity tagger from gazetteers with the partial perceptron.
While gazetteers can be used to perform named entity recognition through lookup-based
methods, ambiguity and incomplete gazetteers lead to relatively low recall. A sequence …
methods, ambiguity and incomplete gazetteers lead to relatively low recall. A sequence …
[PDF][PDF] Bootstrapping and evaluating named entity recognition in the biomedical domain
A Vlachos, C Gasperin - Proceedings of the HLT-NAACL BioNLP …, 2006 - aclanthology.org
We demonstrate that bootstrapping a gene name recognizer for FlyBase curation from
automatically annotated noisy text is more effective than fully supervised training of the …
automatically annotated noisy text is more effective than fully supervised training of the …
Statistical anaphora resolution in biomedical texts
CV Gasperin - 2009 - cl.cam.ac.uk
This thesis presents a study of anaphora in biomedical scientific literature and focuses on
tackling the problem of anaphora resolution in this domain. Biomedical literature has been …
tackling the problem of anaphora resolution in this domain. Biomedical literature has been …
Integrating natural language processing with FlyBase curation
Abstract Applying Natural Language Processing techniques to biomedical text as a potential
aid to curation has become the focus of intensive research. However, developing integrated …
aid to curation has become the focus of intensive research. However, developing integrated …
An introduction to tag sequence grammars and the RASP system parser
T Briscoe - 2006 - cl.cam.ac.uk
This report describes the tag sequence grammars released as part of the Robust Accurate
Statistical Parsing (RASP) system. It is intended to help users of RASP understand the …
Statistical Parsing (RASP) system. It is intended to help users of RASP understand the …
[PDF][PDF] Annotation of anaphoric relations in biomedical full-text articles using a domain-relevant scheme
C Gasperin, N Karamanis, R Seal - Proceedings of DAARC, 2007 - Citeseer
Biomedical literature has been the focus of relevant information extraction projects, however
there is no corpus of full scientific articles annotated with anaphoric links for training and …
there is no corpus of full scientific articles annotated with anaphoric links for training and …