Review of the Geant4-DNA simulation toolkit for radiobiological applications at the cellular and DNA level

I Kyriakou, D Sakata, HN Tran, Y Perrot, WG Shin… - Cancers, 2021 - mdpi.com
Simple Summary A brief description of the methodologies to simulate ionizing radiation
transport in biologically relevant matter is presented. Emphasis is given to the physical …

Prospects of nanoparticle-based radioenhancement for radiotherapy

LRH Gerken, ME Gerdes, M Pruschy… - Materials horizons, 2023 - pubs.rsc.org
Radiotherapy is a key pillar of solid cancer treatment. Despite high level of conformal dose
deposition, radiotherapy is limited due to co-irradiation of organs-at risk and subsequent …

TOPAS-nBio: an extension to the TOPAS simulation toolkit for cellular and sub-cellular radiobiology

J Schuemann, AL McNamara… - Radiation …, 2019 - meridian.allenpress.com
The TOPAS Monte Carlo (MC) system is used in radiation therapy and medical imaging
research, having played a significant role in making Monte Carlo simulations widely …

Modeling the effect of oxygen on the chemical stage of water radiolysis using GPU-based microscopic Monte Carlo simulations, with an application in FLASH …

Y Lai, X Jia, Y Chi - Physics in Medicine & Biology, 2021 - iopscience.iop.org
Oxygen plays a critical role in determining the initial DNA damages induced by ionizing
radiation. It is important to mechanistically model the oxygen effect in the water radiolysis …

LET-dependent intertrack yields in proton irradiation at ultra-high dose rates relevant for FLASH therapy

J Ramos-Méndez, N Domínguez-Kondo… - Radiation …, 2020 - meridian.allenpress.com
FLASH radiotherapy delivers a high dose (≥ 10 Gy) at a high rate (≥ 40 Gy/s). In this way,
particles are delivered in pulses as short as a few nanoseconds. At that rate, intertrack …

Mechanistic modelling of radiation responses

SJ McMahon, KM Prise - Cancers, 2019 - mdpi.com
Radiobiological modelling has been a key part of radiation biology and therapy for many
decades, and many aspects of clinical practice are guided by tools such as the linear …

Modelling variable proton relative biological effectiveness for treatment planning

A McNamara, H Willers… - The British journal of …, 2020 - academic.oup.com
Dose in proton radiotherapy is generally prescribed by scaling the physical proton dose by a
constant value of 1.1. Relative biological effectiveness (RBE) is defined as the ratio of doses …

Independent reaction times method in Geant4‐DNA: Implementation and performance

J Ramos‐Méndez, W Shin, M Karamitros… - Medical …, 2020 - Wiley Online Library
Purpose The simulation of individual particle tracks and the chemical stage following water
radiolysis in biological tissue is an effective means of improving our knowledge of the …

Geant4-DNA simulation of the pre-chemical stage of water radiolysis and its impact on initial radiochemical yields

WG Shin, J Ramos-Mendez, NH Tran, S Okada… - Physica Medica, 2021 - Elsevier
This paper demonstrates the impact of the pre-chemical stage, especially the dissociation
scheme and the associated probabilities, on water radiolysis simulation using the Geant4 …

A new standard DNA damage (SDD) data format

J Schuemann, AL McNamara… - Radiation …, 2019 - meridian.allenpress.com
Our understanding of radiation-induced cellular damage has greatly improved over the past
few decades. Despite this progress, there are still many obstacles to fully understand how …