CHARMM at 45: Enhancements in accessibility, functionality, and speed
W Hwang, SL Austin, A Blondel… - The Journal of …, 2024 - ACS Publications
Since its inception nearly a half century ago, CHARMM has been playing a central role in
computational biochemistry and biophysics. Commensurate with the developments in …
computational biochemistry and biophysics. Commensurate with the developments in …
CHARMM-GUI Membrane Builder: Past, Current, and Future Developments and Applications
Molecular dynamics simulations of membranes and membrane proteins serve as
computational microscopes, revealing coordinated events at the membrane interface. As G …
computational microscopes, revealing coordinated events at the membrane interface. As G …
Nav1.2 channel mutations preventing fast inactivation lead to SCN2A encephalopathy
G Berecki, E Tao, KB Howell, RK Coorg, E Andersen… - Brain, 2025 - academic.oup.com
SCN2A gene-related early-infantile developmental and epileptic encephalopathy (EI-DEE)
is a rare and severe disorder that manifests in early infancy. SCN2A mutations affecting the …
is a rare and severe disorder that manifests in early infancy. SCN2A mutations affecting the …
Exploiting in silico structural analysis to introduce emerging genotype–phenotype correlations in DHCR24-related sterol biosynthesis disorder: a case study
Desmosterolosis is a rare sterol biosynthesis disorder characterized by multiple congenital
anomalies, failure to thrive, severe developmental delay, progressive epileptic …
anomalies, failure to thrive, severe developmental delay, progressive epileptic …
Antiviral drug recognition and elevator-type transport motions of CNT3
Nucleoside analogs have broad clinical utility as antiviral drugs. Key to their systemic
distribution and cellular entry are human nucleoside transporters. Here, we establish that the …
distribution and cellular entry are human nucleoside transporters. Here, we establish that the …
Elucidating Protein Structures in the Gas Phase: Traversing Configuration Space with Biasing Methods
Achieving accurate characterization of protein structures in the gas phase continues to be a
formidable challenge. To tackle this issue, the present study employs Molecular Dynamics …
formidable challenge. To tackle this issue, the present study employs Molecular Dynamics …
CHARMM-GUI PDB Reader and Manipulator: Covalent Ligand Modeling and Simulation
Molecular modeling and simulation serve an important role in exploring biological functions
of proteins at the molecular level, which is complementary to experiments. CHARMM-GUI …
of proteins at the molecular level, which is complementary to experiments. CHARMM-GUI …
[HTML][HTML] The Putative Role of TIM-3 Variants in Polyendocrine Autoimmunity: Insights from a WES Investigation
Autoimmune polyglandular syndrome (APS) comprises a complex association of
autoimmune pathological conditions. APS Type 1 originates from loss-of-function mutations …
autoimmune pathological conditions. APS Type 1 originates from loss-of-function mutations …
[HTML][HTML] Analogs of α‐conotoxin PnIC selectively inhibit α7β2‐over α7‐only subtype nicotinic acetylcholine receptors via a novel allosteric mechanism
AA George, SJ John, LM Lucero, JB Eaton… - The FASEB …, 2024 - ncbi.nlm.nih.gov
This study was undertaken to identify and characterize the first ligands capable of selectively
identifying nicotinic acetylcholine receptors containing α7 and β2 subunits (α7β2‐nAChR …
identifying nicotinic acetylcholine receptors containing α7 and β2 subunits (α7β2‐nAChR …
Insights into dynamic changes in ADC-7 and P99 cephalosporinases using small angle x-ray scattering (SAXS)
To counter the emergence of β-lactamase (BL) mediated resistance, design of new β-
lactamase inhibitors (BLIs) is critical. Many high-resolution crystallographic structures of BL …
lactamase inhibitors (BLIs) is critical. Many high-resolution crystallographic structures of BL …