APOBEC: A molecular driver in cervical cancer pathogenesis
S Revathidevi, AK Murugan, H Nakaoka, I Inoue… - Cancer letters, 2021 - Elsevier
Cervical cancer is one of the foremost common cancers in women. Human papillomavirus
(HPV) infection remains a major risk factor of cervical cancer. In addition, numerous other …
(HPV) infection remains a major risk factor of cervical cancer. In addition, numerous other …
APOBEC enzymes: mutagenic fuel for cancer evolution and heterogeneity
Deep sequencing technologies are revealing the complexities of cancer evolution, casting
light on mutational processes fueling tumor adaptation, immune escape, and treatment …
light on mutational processes fueling tumor adaptation, immune escape, and treatment …
Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA
R Vaisvila, VKC Ponnaluri, Z Sun… - Genome …, 2021 - genome.cshlp.org
Bisulfite sequencing detects 5mC and 5hmC at single-base resolution. However, bisulfite
treatment damages DNA, which results in fragmentation, DNA loss, and biased sequencing …
treatment damages DNA, which results in fragmentation, DNA loss, and biased sequencing …
Evaluation and minimization of Cas9-independent off-target DNA editing by cytosine base editors
Cytosine base editors (CBEs) enable targeted C• G-to-T• A conversions in genomic DNA.
Recent studies report that BE3, the original CBE, induces a low frequency of genome-wide …
Recent studies report that BE3, the original CBE, induces a low frequency of genome-wide …
Specific and nonhepatotoxic degradation of nuclear hepatitis B virus cccDNA
J Lucifora, Y Xia, F Reisinger, K Zhang, D Stadler… - Science, 2014 - science.org
Current antiviral agents can control but not eliminate hepatitis B virus (HBV), because HBV
establishes a stable nuclear covalently closed circular DNA (cccDNA). Interferon-α treatment …
establishes a stable nuclear covalently closed circular DNA (cccDNA). Interferon-α treatment …
APOBEC3B is an enzymatic source of mutation in breast cancer
Several mutations are required for cancer development, and genome sequencing has
revealed that many cancers, including breast cancer, have somatic mutation spectra …
revealed that many cancers, including breast cancer, have somatic mutation spectra …
Efficient base editing in methylated regions with a human APOBEC3A-Cas9 fusion
X Wang, J Li, Y Wang, B Yang, J Wei, J Wu… - Nature …, 2018 - nature.com
Base editors (BEs) enable the generation of targeted single-nucleotide mutations, but
currently used rat APOBEC1-based BEs are relatively inefficient in editing cytosines in …
currently used rat APOBEC1-based BEs are relatively inefficient in editing cytosines in …
Nondestructive, base-resolution sequencing of 5-hydroxymethylcytosine using a DNA deaminase
EK Schutsky, JE DeNizio, P Hu, MY Liu, CS Nabel… - Nature …, 2018 - nature.com
Here we present APOBEC-coupled epigenetic sequencing (ACE-seq), a bisulfite-free
method for localizing 5-hydroxymethylcytosine (5hmC) at single-base resolution with low …
method for localizing 5-hydroxymethylcytosine (5hmC) at single-base resolution with low …
Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B
K Shi, MA Carpenter, S Banerjee, NM Shaban… - Nature structural & …, 2017 - nature.com
APOBEC-catalyzed cytosine-to-uracil deamination of single-stranded DNA (ssDNA) has
beneficial functions in immunity and detrimental effects in cancer. APOBEC enzymes have …
beneficial functions in immunity and detrimental effects in cancer. APOBEC enzymes have …
APOBEC-induced mutagenesis in cancer
TM Mertz, CD Collins, M Dennis… - Annual Review of …, 2022 - annualreviews.org
The initiation, progression, and relapse of cancers often result from mutations occurring
within somatic cells. Consequently, processes that elevate mutation rates accelerate …
within somatic cells. Consequently, processes that elevate mutation rates accelerate …