A new bioinformatics analysis tools framework at EMBL–EBI

M Goujon, H McWilliam, W Li, F Valentin… - Nucleic acids …, 2010 - academic.oup.com
The EMBL-EBI provides access to various mainstream sequence analysis applications.
These include sequence similarity search services such as BLAST, FASTA, InterProScan …

[HTML][HTML] Perspectives on automated composition of workflows in the life sciences

AL Lamprecht, M Palmblad, J Ison, V Schwämmle… - …, 2021 - ncbi.nlm.nih.gov
Scientific data analyses often combine several computational tools in automated pipelines,
or workflows. Thousands of such workflows have been used in the life sciences, though their …

Semantics-based composition of EMBOSS services

AL Lamprecht, S Naujokat, T Margaria… - Journal of Biomedical …, 2011 - Springer
Background More than in other domains the heterogeneous services world in bioinformatics
demands for a methodology to classify and relate resources in a both human and machine …

jORCA: easily integrating bioinformatics Web Services

V Martín-Requena, J Ríos, M García, S Ramírez… - …, 2010 - academic.oup.com
Motivation: Web services technology is becoming the option of choice to deploy
bioinformatics tools that are universally available. One of the major strengths of this …

Workflow composition and enactment using jORCA

J Karlsson, V Martín-Requena, J Ríos… - Leveraging Applications of …, 2010 - Springer
Support for automated service discovering and workflow composition is increasingly
important as the number of Web Services and data types in bioinformatics and biomedicine …

Mining semantic networks of bioinformatics e-resources from the literature

H Afzal, J Eales, R Stevens, G Nenadic - Journal of biomedical semantics, 2011 - Springer
Background There have been a number of recent efforts (eg BioCatalogue, BioMoby) to
systematically catalogue bioinformatics tools, services and datasets. These efforts rely on …

Suggestions for galaxy workflow design using semantically annotated services

A Dhamanaskar, ME Cotterell, J Zheng… - Formal Ontology in …, 2012 - ebooks.iospress.nl
The wide-scale development of ontologies in the bioinformatics domain facilitates their use
in the creation of scientific workflows. To speed up the design of workflows, a Service …

Bio-Search Computing: Integration and global ranking of bioinformatics search results

M Masseroli, G Ghisalberti, S Ceri - Journal of Integrative …, 2011 - degruyter.com
Summary In the Life Sciences, numerous questions can be addressed only by
comprehensively searching different types of data that are inherently ordered, or are …

Chapter 15: search computing and the life sciences

M Masseroli, NW Paton, I Spasić - Search Computing: Challenges and …, 2010 - Springer
Search Computing has been proposed to support the integration of the results of search
engines with other data and computational resources. A key feature of the resulting …

[图书][B] Bio-SeCo: Integration and global ranking of biomedical search results

M Masseroli, G Ghisalberti - 2011 - Springer
This chapter presents how well known bioinformatics resources can be described as search
services in the search computing framework and how integrated analyses over such …