A new bioinformatics analysis tools framework at EMBL–EBI
M Goujon, H McWilliam, W Li, F Valentin… - Nucleic acids …, 2010 - academic.oup.com
The EMBL-EBI provides access to various mainstream sequence analysis applications.
These include sequence similarity search services such as BLAST, FASTA, InterProScan …
These include sequence similarity search services such as BLAST, FASTA, InterProScan …
[HTML][HTML] Perspectives on automated composition of workflows in the life sciences
Scientific data analyses often combine several computational tools in automated pipelines,
or workflows. Thousands of such workflows have been used in the life sciences, though their …
or workflows. Thousands of such workflows have been used in the life sciences, though their …
Semantics-based composition of EMBOSS services
Background More than in other domains the heterogeneous services world in bioinformatics
demands for a methodology to classify and relate resources in a both human and machine …
demands for a methodology to classify and relate resources in a both human and machine …
jORCA: easily integrating bioinformatics Web Services
V Martín-Requena, J Ríos, M García, S Ramírez… - …, 2010 - academic.oup.com
Motivation: Web services technology is becoming the option of choice to deploy
bioinformatics tools that are universally available. One of the major strengths of this …
bioinformatics tools that are universally available. One of the major strengths of this …
Workflow composition and enactment using jORCA
J Karlsson, V Martín-Requena, J Ríos… - Leveraging Applications of …, 2010 - Springer
Support for automated service discovering and workflow composition is increasingly
important as the number of Web Services and data types in bioinformatics and biomedicine …
important as the number of Web Services and data types in bioinformatics and biomedicine …
Mining semantic networks of bioinformatics e-resources from the literature
Background There have been a number of recent efforts (eg BioCatalogue, BioMoby) to
systematically catalogue bioinformatics tools, services and datasets. These efforts rely on …
systematically catalogue bioinformatics tools, services and datasets. These efforts rely on …
Suggestions for galaxy workflow design using semantically annotated services
The wide-scale development of ontologies in the bioinformatics domain facilitates their use
in the creation of scientific workflows. To speed up the design of workflows, a Service …
in the creation of scientific workflows. To speed up the design of workflows, a Service …
Bio-Search Computing: Integration and global ranking of bioinformatics search results
M Masseroli, G Ghisalberti, S Ceri - Journal of Integrative …, 2011 - degruyter.com
Summary In the Life Sciences, numerous questions can be addressed only by
comprehensively searching different types of data that are inherently ordered, or are …
comprehensively searching different types of data that are inherently ordered, or are …
Chapter 15: search computing and the life sciences
Search Computing has been proposed to support the integration of the results of search
engines with other data and computational resources. A key feature of the resulting …
engines with other data and computational resources. A key feature of the resulting …
[图书][B] Bio-SeCo: Integration and global ranking of biomedical search results
M Masseroli, G Ghisalberti - 2011 - Springer
This chapter presents how well known bioinformatics resources can be described as search
services in the search computing framework and how integrated analyses over such …
services in the search computing framework and how integrated analyses over such …