Computational dynamic approaches for temporal omics data with applications to systems medicine
Y Liang, A Kelemen - BioData mining, 2017 - Springer
Modeling and predicting biological dynamic systems and simultaneously estimating the
kinetic structural and functional parameters are extremely important in systems and …
kinetic structural and functional parameters are extremely important in systems and …
Early epitope-specific IgE antibodies are predictive of childhood peanut allergy
Background Peanut allergy is characterized by the development of IgE against peanut
antigen. Objective We sought to evaluate the evolution of epitope-specific (es) IgE and …
antigen. Objective We sought to evaluate the evolution of epitope-specific (es) IgE and …
[HTML][HTML] Early quantification of systemic inflammatory proteins predicts long-term treatment response to tofacitinib and etanercept
The application of machine learning to longitudinal gene-expression profiles has
demonstrated potential to decrease the assessment gap, between biochemical …
demonstrated potential to decrease the assessment gap, between biochemical …
Discriminating sample groups with multi-way data
High-dimensional linear classifiers, such as distance weighted discrimination (DWD) and
versions of the support vector machine (SVM), are commonly used in biomedical research to …
versions of the support vector machine (SVM), are commonly used in biomedical research to …
Transcriptome modulation by hydrocortisone in severe burn shock: ancillary analysis of a prospective randomized trial
J Plassais, F Venet, MA Cazalis, D Le Quang, A Pachot… - Critical Care, 2017 - Springer
Background Despite shortening vasopressor use in shock, hydrocortisone administration
remains controversial, with potential harm to the immune system. Few studies have …
remains controversial, with potential harm to the immune system. Few studies have …
Regularization method for predicting an ordinal response using longitudinal high-dimensional genomic data
An ordinal scale is commonly used to measure health status and disease related outcomes
in hospital settings as well as in translational medical research. In addition, repeated …
in hospital settings as well as in translational medical research. In addition, repeated …
Principal trend analysis for time-course data with applications in genomic medicine
Y Zhang, R Davis - The Annals of Applied Statistics, 2013 - JSTOR
Time-course high-throughput gene expression data are emerging in genomic and
translational medicine. Extracting interesting time-course patterns from a patient cohort can …
translational medicine. Extracting interesting time-course patterns from a patient cohort can …
Joint principal trend analysis for longitudinal high‐dimensional data
We consider a research scenario motivated by integrating multiple sources of information for
better knowledge discovery in diverse dynamic biological processes. Given two longitudinal …
better knowledge discovery in diverse dynamic biological processes. Given two longitudinal …
Separating and reintegrating latent variables to improve classification of genomic data
NY Payne, JA Gagnon-Bartsch - Biostatistics, 2022 - academic.oup.com
Genomic data sets contain the effects of various unobserved biological variables in addition
to the variable of primary interest. These latent variables often affect a large number of …
to the variable of primary interest. These latent variables often affect a large number of …
Feature selection for longitudinal data by using sign averages to summarize gene expression values over time
S Tian, C Wang - BioMed Research International, 2019 - Wiley Online Library
With the rapid evolution of high‐throughput technologies, time series/longitudinal high‐
throughput experiments have become possible and affordable. However, the development …
throughput experiments have become possible and affordable. However, the development …