Phase separation and transcription regulation: are super‐enhancers and locus control regions primary sites of transcription complex assembly?
It is proposed that the multiple enhancer elements associated with locus control regions and
super‐enhancers recruit RNA polymerase II and efficiently assemble elongation competent …
super‐enhancers recruit RNA polymerase II and efficiently assemble elongation competent …
Metabolic control of induced pluripotency
SA Sinenko, AN Tomilin - Frontiers in Cell and Developmental Biology, 2024 - frontiersin.org
Pluripotent stem cells of the mammalian epiblast and their cultured counterparts—embryonic
stem cells (ESCs) and epiblast stem cells (EpiSCs)—have the capacity to differentiate in all …
stem cells (ESCs) and epiblast stem cells (EpiSCs)—have the capacity to differentiate in all …
Bromodomain inhibition of the coactivators CBP/EP300 facilitate cellular reprogramming
Silencing of the somatic cell type-specific genes is a critical yet poorly understood step in
reprogramming. To uncover pathways that maintain cell identity, we performed a …
reprogramming. To uncover pathways that maintain cell identity, we performed a …
Global hyperactivation of enhancers stabilizes human and mouse naive pluripotency through inhibition of CDK8/19 Mediator kinases
CJ Lynch, R Bernad, A Martínez-Val, MN Shahbazi… - Nature Cell …, 2020 - nature.com
Pluripotent stem cells (PSCs) transition between cell states in vitro, reflecting developmental
changes in the early embryo. PSCs can be stabilized in the naive state by blocking …
changes in the early embryo. PSCs can be stabilized in the naive state by blocking …
The NuRD complex cooperates with SALL4 to orchestrate reprogramming
B Wang, C Li, J Ming, L Wu, S Fang, Y Huang… - Nature …, 2023 - nature.com
Cell fate decision involves rewiring of the genome, but remains poorly understood at the
chromatin level. Here, we report that chromatin remodeling complex NuRD participates in …
chromatin level. Here, we report that chromatin remodeling complex NuRD participates in …
Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CLpro substrate degradome
The main viral protease (3CL pro) is indispensable for SARS-CoV-2 replication. We
delineate the human protein substrate landscape of 3CL pro by TAILS substrate-targeted N …
delineate the human protein substrate landscape of 3CL pro by TAILS substrate-targeted N …
Label-free quantitative proteomics reveals the mechanism of microwave-induced Tartary buckwheat germination and flavonoids enrichment
S Wang, S Wang, J Wang, W Peng - Food Research International, 2022 - Elsevier
The objective of this study was to reveal the mechanism underlying the effects of microwave
treatment on Tartary buckwheat germination and flavonoids enrichment. Label-free …
treatment on Tartary buckwheat germination and flavonoids enrichment. Label-free …
Predict long-range enhancer regulation based on protein–protein interactions between transcription factors
Long-range regulation by distal enhancers plays critical roles in cell-type specific
transcriptional programs. Computational predictions of genome-wide enhancer–promoter …
transcriptional programs. Computational predictions of genome-wide enhancer–promoter …
Going up the hill: Chromatin‐based barriers to epigenetic reprogramming
DH Arabacı, G Terzioğlu, B Bayırbaşı… - The FEBS …, 2021 - Wiley Online Library
The establishment and maintenance of cellular identity are crucial during development and
tissue homeostasis. Epigenetic mechanisms based largely on DNA methylation and histone …
tissue homeostasis. Epigenetic mechanisms based largely on DNA methylation and histone …
Oncogenic seRNA functional activation: a novel mechanism of tumorigenesis
Y Tan, Y Li, F Tang - Molecular Cancer, 2020 - Springer
Abstract seRNA is a noncoding RNA (ncRNA) transcribed from active super-enhancer (SE),
through which SE exerts biological functions and participates in various physiological and …
through which SE exerts biological functions and participates in various physiological and …