Advances in industrial biotechnology using CRISPR-Cas systems
PD Donohoue, R Barrangou, AP May - Trends in biotechnology, 2018 - cell.com
The term 'clustered regularly interspaced short palindromic repeats'(CRISPR) has recently
become synonymous with the genome-editing revolution. The RNA-guided endonuclease …
become synonymous with the genome-editing revolution. The RNA-guided endonuclease …
Embracing Diversity: Differences in Virulence Mechanisms, Disease Severity, and Host Adaptations Contribute to the Success of Nontyphoidal Salmonella as a …
RA Cheng, CR Eade, M Wiedmann - Frontiers in microbiology, 2019 - frontiersin.org
Not all Salmonella enterica serovars cause the same disease. S. enterica represents an
incredibly diverse species comprising> 2,600 unique serovars. While some S. enterica …
incredibly diverse species comprising> 2,600 unique serovars. While some S. enterica …
Genomic epidemiology: whole-genome-sequencing–powered surveillance and outbreak investigation of foodborne bacterial pathogens
X Deng, HC den Bakker… - Annual review of food …, 2016 - annualreviews.org
As we are approaching the twentieth anniversary of PulseNet, a network of public health and
regulatory laboratories that has changed the landscape of foodborne illness surveillance …
regulatory laboratories that has changed the landscape of foodborne illness surveillance …
GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno …
P Vinuesa, LE Ochoa-Sánchez… - Frontiers in …, 2018 - frontiersin.org
The massive accumulation of genome-sequences in public databases promoted the
proliferation of genome-level phylogenetic analyses in many areas of biological research …
proliferation of genome-level phylogenetic analyses in many areas of biological research …
Navigating microbiological food safety in the era of whole-genome sequencing
The epidemiological investigation of a foodborne outbreak, including identification of related
cases, source attribution, and development of intervention strategies, relies heavily on the …
cases, source attribution, and development of intervention strategies, relies heavily on the …
Genomic Features of High-Priority Salmonella enterica Serovars Circulating in the Food Production Chain, Brazil, 2000–2016
Multidrug-resistant (MDR) Salmonella enterica has been deemed a high-priority pathogen
by the World Health Organization. Two hundred and sixty-four Salmonella enterica isolates …
by the World Health Organization. Two hundred and sixty-four Salmonella enterica isolates …
Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis
ABSTRACT A retrospective investigation was performed to evaluate whole-genome
sequencing as a benchmark for comparing molecular subtyping methods for Salmonella …
sequencing as a benchmark for comparing molecular subtyping methods for Salmonella …
EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations
The definition of bacterial species is traditionally a taxonomic issue while bacterial
populations are identified by population genetics. These assignments are species specific …
populations are identified by population genetics. These assignments are species specific …
Characterization and evolution of Salmonella CRISPR-Cas systems
Prokaryotic CRISPR-Cas (clustered regularly interspaced short palindromic repeats and C
RISPR-as sociated genes) systems provide adaptive immunity from invasive genetic …
RISPR-as sociated genes) systems provide adaptive immunity from invasive genetic …
Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?
Salmonella enterica subsp. enterica bacteria are highly diverse foodborne pathogens that
are subdivided into more than 1,500 serovars. The diversity is believed to result from …
are subdivided into more than 1,500 serovars. The diversity is believed to result from …