[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …

Genetic markers for metabarcoding of freshwater microalgae

E Kezlya, N Tseplik, M Kulikovskiy - Biology, 2023 - mdpi.com
Simple Summary The metabarcoding approach is widely used for studying the diversity and
distribution of freshwater microalgae and for routine biomonitoring. Due to microalgae being …

DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey …

N Salmaso, V Vasselon, F Rimet, M Vautier… - Science of the Total …, 2022 - Elsevier
The taxonomic identification of organisms based on the amplification of specific genetic
markers (metabarcoding) implicitly requires adequate discriminatory information and …

Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers

J Pérez-Burillo, R Trobajo, V Vasselon, F Rimet… - Science of The Total …, 2020 - Elsevier
Our study of 164 diatom samples from Catalonia (NE Spain) is the first to evaluate the
applicability of DNA metabarcoding, based on high throughput sequencing (HTS) using a …

Benthic diatoms in river biomonitoring—present and future perspectives within the water framework directive

A Masouras, I Karaouzas, E Dimitriou, G Tsirtsis… - Water, 2021 - mdpi.com
The European Water Framework Directive 2000/60/EC (WFD) has been implemented over
the past 20 years, using physicochemical, biological and hydromorphological elements to …

Diversity of freshwater algal assemblages across the United States as revealed by DNA metabarcoding

NO Schulte, JM Craine, DR Leopold… - Environmental …, 2024 - Wiley Online Library
As freshwater algae respond strongly to environmental conditions, algal communities are
routinely used as indicators of aquatic health. Algal bioassessments have historically relied …

[HTML][HTML] Evaluation of a diatom eDNA-based technique for assessing water quality variations in tropical lakes and reservoirs

SN Kutty, RK Loh, W Bannister, D Taylor - Ecological Indicators, 2022 - Elsevier
Freshwater bodies, both lotic (canals, rivers) and lentic (lakes and reservoirs), in the tropics
have only rarely been subjected to intense monitoring regimes owing to limited expertise …

Highly comparable metabarcoding results from MGI-Tech and Illumina sequencing platforms

S Anslan, V Mikryukov, K Armolaitis, J Ankuda… - PeerJ, 2021 - peerj.com
With the developments in DNA nanoball sequencing technologies and the emergence of
new platforms, there is an increasing interest in their performance in comparison with the …

Diatom eDNA metabarcoding and morphological methods for bioassessment of karstic river

A Kulaš, MG Udovič, K Tapolczai, P Žutinić… - Science of the total …, 2022 - Elsevier
Karst ecosystems play a unique role as exceptional natural habitats in sustaining
biodiversity. This study focuses on diatoms, a diverse group of microeukaryotes in the …

 A strategy for successful integration of DNA-based methods in aquatic monitoring

P Blancher, E Lefrançois, F Rimet… - Metabarcoding and …, 2022 - repositori.irta.cat
Recent advances in molecular biomonitoring open new horizons for aquatic ecosystem
assessment. Rapid and cost-effective methods based on organismal DNA or environmental …