[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
Genetic markers for metabarcoding of freshwater microalgae
E Kezlya, N Tseplik, M Kulikovskiy - Biology, 2023 - mdpi.com
Simple Summary The metabarcoding approach is widely used for studying the diversity and
distribution of freshwater microalgae and for routine biomonitoring. Due to microalgae being …
distribution of freshwater microalgae and for routine biomonitoring. Due to microalgae being …
DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey …
N Salmaso, V Vasselon, F Rimet, M Vautier… - Science of the Total …, 2022 - Elsevier
The taxonomic identification of organisms based on the amplification of specific genetic
markers (metabarcoding) implicitly requires adequate discriminatory information and …
markers (metabarcoding) implicitly requires adequate discriminatory information and …
Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers
J Pérez-Burillo, R Trobajo, V Vasselon, F Rimet… - Science of The Total …, 2020 - Elsevier
Our study of 164 diatom samples from Catalonia (NE Spain) is the first to evaluate the
applicability of DNA metabarcoding, based on high throughput sequencing (HTS) using a …
applicability of DNA metabarcoding, based on high throughput sequencing (HTS) using a …
Benthic diatoms in river biomonitoring—present and future perspectives within the water framework directive
The European Water Framework Directive 2000/60/EC (WFD) has been implemented over
the past 20 years, using physicochemical, biological and hydromorphological elements to …
the past 20 years, using physicochemical, biological and hydromorphological elements to …
Diversity of freshwater algal assemblages across the United States as revealed by DNA metabarcoding
As freshwater algae respond strongly to environmental conditions, algal communities are
routinely used as indicators of aquatic health. Algal bioassessments have historically relied …
routinely used as indicators of aquatic health. Algal bioassessments have historically relied …
[HTML][HTML] Evaluation of a diatom eDNA-based technique for assessing water quality variations in tropical lakes and reservoirs
Freshwater bodies, both lotic (canals, rivers) and lentic (lakes and reservoirs), in the tropics
have only rarely been subjected to intense monitoring regimes owing to limited expertise …
have only rarely been subjected to intense monitoring regimes owing to limited expertise …
Highly comparable metabarcoding results from MGI-Tech and Illumina sequencing platforms
S Anslan, V Mikryukov, K Armolaitis, J Ankuda… - PeerJ, 2021 - peerj.com
With the developments in DNA nanoball sequencing technologies and the emergence of
new platforms, there is an increasing interest in their performance in comparison with the …
new platforms, there is an increasing interest in their performance in comparison with the …
Diatom eDNA metabarcoding and morphological methods for bioassessment of karstic river
Karst ecosystems play a unique role as exceptional natural habitats in sustaining
biodiversity. This study focuses on diatoms, a diverse group of microeukaryotes in the …
biodiversity. This study focuses on diatoms, a diverse group of microeukaryotes in the …
A strategy for successful integration of DNA-based methods in aquatic monitoring
P Blancher, E Lefrançois, F Rimet… - Metabarcoding and …, 2022 - repositori.irta.cat
Recent advances in molecular biomonitoring open new horizons for aquatic ecosystem
assessment. Rapid and cost-effective methods based on organismal DNA or environmental …
assessment. Rapid and cost-effective methods based on organismal DNA or environmental …