Polyploid phylogenetics

CJ Rothfels - New Phytologist, 2021 - Wiley Online Library
Polyploidy is a dominant feature of extant plant diversity. However, major research
questions, including whether polyploidy is important to long‐term evolution or is just …

Untying Gordian knots: unraveling reticulate polyploid plant evolution by genomic data using the large Ranunculus auricomus species complex

K Karbstein, S Tomasello, L Hodač, N Wagner… - New …, 2022 - Wiley Online Library
Speciation via hybridization and polyploidization is a major evolutionary force in plant
evolution but is still poorly understood for neopolyploid groups. Challenges are attributed to …

Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants

WJ Baker, S Dodsworth, F Forest, SW Graham… - 2021 - ttu-ir.tdl.org
The unveiling of the angiosperm (flowering plant) tree of life over the past three decades has
been one of the great success stories of modern plant biology. Flowering plants underpin …

Botany and geogenomics: Constraining geological hypotheses in the neotropics with large‐scale genetic data derived from plants

AM Bedoya - American Journal of Botany, 2024 - Wiley Online Library
Decades of empirical research have revealed how the geological history of our planet
shaped plant evolution by establishing well‐known patterns (eg, how mountain uplift …

Using target sequence capture to improve the phylogenetic resolution of a rapid radiation in New Zealand Veronica

AE Thomas, J Igea, HM Meudt… - American journal of …, 2021 - Wiley Online Library
PREMISE Recent, rapid radiations present a challenge for phylogenetic reconstruction. Fast
successive speciation events typically lead to low sequence divergence and poorly resolved …

Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla sl (Rosaceae)

DF Morales-Briones, B Gehrke, CH Huang… - Systematic …, 2022 - academic.oup.com
Target enrichment is becoming increasingly popular for phylogenomic studies. Although
baits for enrichment are typically designed to target single-copy genes, paralogs are often …

[HTML][HTML] Allele sorting as a novel approach to resolving the origin of allotetraploids using Hyb-Seq data: a case study of the Balkan mountain endemic Cardamine …

M Šlenker, A Kantor, K Marhold, R Schmickl… - Frontiers in Plant …, 2021 - frontiersin.org
Mountains of the Balkan Peninsula are significant biodiversity hotspots with great species
richness and a large proportion of narrow endemics. Processes that have driven the …

Genome evolution of the ancient hexaploid Platanus × acerifolia (London planetree)

X Yan, G Shi, M Sun, S Shan, R Chen… - Proceedings of the …, 2024 - National Acad Sciences
Whole-genome duplication (WGD; ie, polyploidy) and chromosomal rearrangement (ie,
genome shuffling) significantly influence genome structure and organization. Many …

Frequent allopolyploidy with distant progenitors in the moss genera Physcomitrium and Entosthodon (Funariaceae) identified via subgenome phasing of targeted …

N Patel, R Medina, LD Williams, O Lemieux… - …, 2023 - academic.oup.com
Allopolyploids represent a new frontier in species discovery among embryophytes. Within
mosses, allopolyploid discovery is challenged by low morphological complexity. The rapid …

HybPhaser identifies hybrid evolution in Australian Thelypteridaceae

Z Bloesch, L Nauheimer, TE Almeida, D Crayn… - Molecular Phylogenetics …, 2022 - Elsevier
Hybridisation has been proposed to play an important role in fern evolution, but has been
difficult to investigate. This study explores the utility of target sequence capture and read-to …