Fluorescent proteins and genetically encoded biosensors

M Wang, Y Da, Y Tian - Chemical Society Reviews, 2023 - pubs.rsc.org
The genetically encoded fluorescent sensors convert chemical and physical signals into
light. They are powerful tools for the visualisation of physiological processes in living cells …

Phytochrome signaling networks

MC Cheng, PK Kathare, I Paik… - Annual Review of Plant …, 2021 - annualreviews.org
The perception of light signals by the phytochrome family of photoreceptors has a crucial
influence on almost all aspects of growth and development throughout a plant's life cycle …

Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants

M Legris, YÇ Ince, C Fankhauser - Nature communications, 2019 - nature.com
Phytochromes are bilin-binding photosensory receptors which control development over a
broad range of environmental conditions and throughout the whole plant life cycle. Light …

Theory and simulation of the ultrafast double-bond isomerization of biological chromophores

S Gozem, HL Luk, I Schapiro, M Olivucci - Chemical reviews, 2017 - ACS Publications
Ultrafast processes in light-absorbing proteins have been implicated in the primary step in
the light-to-energy conversion and the initialization of photoresponsive biological functions …

Illuminating cell signalling with optogenetic tools

D Tischer, OD Weiner - Nature reviews Molecular cell biology, 2014 - nature.com
The light-based control of ion channels has been transformative for the neurosciences, but
the optogenetic toolkit does not stop there. An expanding number of proteins and cellular …

Near-infrared fluorescent proteins, biosensors, and optogenetic tools engineered from phytochromes

KG Chernov, TA Redchuk, ES Omelina… - Chemical …, 2017 - ACS Publications
Phytochrome photoreceptors absorb far-red and near-infrared (NIR) light and regulate light
responses in plants, fungi, and bacteria. Their multidomain structure and autocatalytic …

Plant phytochrome B is an asymmetric dimer with unique signalling potential

H Li, ES Burgie, ZTK Gannam, H Li, RD Vierstra - Nature, 2022 - nature.com
Many aspects of plant photoperception are mediated by the phytochrome (Phy) family of
bilin-containing photoreceptors that reversibly interconvert between inactive Pr and active …

A red light–responsive photoswitch for deep tissue optogenetics

Y Kuwasaki, K Suzuki, G Yu, S Yamamoto… - Nature …, 2022 - nature.com
Red light penetrates deep into mammalian tissues and has low phototoxicity, but few
optogenetic tools that use red light have been developed. Here we present MagRed, a red …

X-ray-based techniques to study the nano–bio interface

C Sanchez-Cano, RA Alvarez-Puebla, JM Abendroth… - ACS …, 2021 - ACS Publications
X-ray-based analytics are routinely applied in many fields, including physics, chemistry,
materials science, and engineering. The full potential of such techniques in the life sciences …

Principles and overview of sampling methods for modeling macromolecular structure and dynamics

T Maximova, R Moffatt, B Ma, R Nussinov… - PLoS computational …, 2016 - journals.plos.org
Investigation of macromolecular structure and dynamics is fundamental to understanding
how macromolecules carry out their functions in the cell. Significant advances have been …