Statistical and integrative system-level analysis of DNA methylation data

AE Teschendorff, CL Relton - Nature Reviews Genetics, 2018 - nature.com
Epigenetics plays a key role in cellular development and function. Alterations to the
epigenome are thought to capture and mediate the effects of genetic and environmental risk …

Recommendations for the design and analysis of epigenome-wide association studies

KB Michels, AM Binder, S Dedeurwaerder… - Nature …, 2013 - nature.com
Epigenome-wide association studies (EWAS) hold promise for the detection of new
regulatory mechanisms that may be susceptible to modification by environmental and …

Reference-free cell mixture adjustments in analysis of DNA methylation data

EA Houseman, J Molitor, CJ Marsit - Bioinformatics, 2014 - academic.oup.com
Motivation: Recently there has been increasing interest in the effects of cell mixture on the
measurement of DNA methylation, specifically the extent to which small perturbations in cell …

Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis

DC Koestler, BC Christensen, MR Karagas, CJ Marsit… - Epigenetics, 2013 - Taylor & Francis
The potential influence of underlying differences in relative leukocyte distributions in studies
involving blood-based profiling of DNA methylation is well recognized and has prompted …

Epigenome-based cancer risk prediction: rationale, opportunities and challenges

M Widschwendter, A Jones, I Evans, D Reisel… - Nature reviews Clinical …, 2018 - nature.com
The incidence of cancer is continuing to rise and risk-tailored early diagnostic and/or primary
prevention strategies are urgently required. The ideal risk-predictive test should: integrate …

Improving cell mixture deconvolution by id entifying o ptimal dna methylation l ibraries (idol)

DC Koestler, MJ Jones, J Usset, BC Christensen… - BMC …, 2016 - Springer
Background Confounding due to cellular heterogeneity represents one of the foremost
challenges currently facing Epigenome-Wide Association Studies (EWAS). Statistical …

Blood-based DNA methylation as biomarker for breast cancer: a systematic review

Q Tang, J Cheng, X Cao, H Surowy, B Burwinkel - Clinical epigenetics, 2016 - Springer
Multiple studies have investigated global DNA methylation profiles and gene-specific DNA
methylation in blood-based DNA to develop powerful screening markers for cancer. This …

Heterogeneity in white blood cells has potential to confound DNA methylation measurements

BT Adalsteinsson, H Gudnason, T Aspelund, TB Harris… - 2012 - journals.plos.org
Epigenetic studies are commonly conducted on DNA from tissue samples. However, tissues
are ensembles of cells that may each have their own epigenetic profile, and therefore inter …

[HTML][HTML] DNA methylation and exposure to ambient air pollution in two prospective cohorts

M Plusquin, F Guida, S Polidoro, R Vermeulen… - Environment …, 2017 - Elsevier
Long-term exposure to air pollution has been associated with several adverse health effects
including cardiovascular, respiratory diseases and cancers. However, underlying molecular …

[HTML][HTML] Blood-based DNA methylation signatures in cancer: A systematic review

Y Li, Z Fan, Y Meng, S Liu, H Zhan - … Acta (BBA)-Molecular Basis of Disease, 2023 - Elsevier
DNA methylation profiles are in dynamic equilibrium via the initiation of methylation,
maintenance of methylation and demethylation, which control gene expression and …