Ancient pathogen genomics as an emerging tool for infectious disease research

MA Spyrou, KI Bos, A Herbig, J Krause - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, a genomics revolution, made possible through the development of
high-throughput sequencing, has triggered considerable progress in the study of ancient …

The evolution and clinical impact of hepatitis B virus genome diversity

PA Revill, T Tu, HJ Netter, LKW Yuen… - Nature Reviews …, 2020 - nature.com
The global burden of hepatitis B virus (HBV) is enormous, with 257 million persons
chronically infected, resulting in more than 880,000 deaths per year worldwide. HBV exists …

Ten millennia of hepatitis B virus evolution

A Kocher, L Papac, R Barquera, FM Key, MA Spyrou… - Science, 2021 - science.org
Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health
problem, but its past diversity and dispersal routes are largely unknown. We generated HBV …

Ancient hepatitis B viruses from the Bronze Age to the Medieval period

B Mühlemann, TC Jones, PB Damgaard, ME Allentoft… - Nature, 2018 - nature.com
Hepatitis B virus (HBV) is a major cause of human hepatitis. There is considerable
uncertainty about the timescale of its evolution and its association with humans. Here we …

Measles virus and rinderpest virus divergence dated to the sixth century BCE

A Düx, S Lequime, LV Patrono, B Vrancken, S Boral… - Science, 2020 - science.org
Many infectious diseases are thought to have emerged in humans after the Neolithic
revolution. Although it is broadly accepted that this also applies to measles, the exact date of …

Prisoners of war—host adaptation and its constraints on virus evolution

P Simmonds, P Aiewsakun, A Katzourakis - Nature Reviews …, 2019 - nature.com
Recent discoveries of contemporary genotypes of hepatitis B virus and parvovirus B19 in
ancient human remains demonstrate that little genetic change has occurred in these viruses …

Bayesian evaluation of temporal signal in measurably evolving populations

S Duchene, P Lemey, T Stadler, SYW Ho… - Molecular Biology …, 2020 - academic.oup.com
Phylogenetic methods can use the sampling times of molecular sequence data to calibrate
the molecular clock, enabling the estimation of evolutionary rates and timescales for rapidly …

Neolithic and medieval virus genomes reveal complex evolution of hepatitis B

B Krause-Kyora, J Susat, FM Key, D Kühnert, E Bosse… - Elife, 2018 - elifesciences.org
The hepatitis B virus (HBV) is one of the most widespread human pathogens known today,
yet its origin and evolutionary history are still unclear and controversial. Here, we report the …

[HTML][HTML] Insights from deep sequencing of the HBV genome—unique, tiny, and misunderstood

AL McNaughton, V D'Arienzo, MA Ansari, SF Lumley… - Gastroenterology, 2019 - Elsevier
Hepatitis B virus (HBV) is a unique, tiny, partially double-stranded, reverse-transcribing DNA
virus with proteins encoded by multiple overlapping reading frames. The substitution rate is …

The recovery, interpretation and use of ancient pathogen genomes

S Duchêne, SYW Ho, AG Carmichael, EC Holmes… - Current Biology, 2020 - cell.com
The ability to sequence genomes from ancient biological material has provided a rich source
of information for evolutionary biology and engaged considerable public interest. Although …