Ancient pathogen genomics as an emerging tool for infectious disease research
Over the past decade, a genomics revolution, made possible through the development of
high-throughput sequencing, has triggered considerable progress in the study of ancient …
high-throughput sequencing, has triggered considerable progress in the study of ancient …
The evolution and clinical impact of hepatitis B virus genome diversity
The global burden of hepatitis B virus (HBV) is enormous, with 257 million persons
chronically infected, resulting in more than 880,000 deaths per year worldwide. HBV exists …
chronically infected, resulting in more than 880,000 deaths per year worldwide. HBV exists …
Ten millennia of hepatitis B virus evolution
Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health
problem, but its past diversity and dispersal routes are largely unknown. We generated HBV …
problem, but its past diversity and dispersal routes are largely unknown. We generated HBV …
Ancient hepatitis B viruses from the Bronze Age to the Medieval period
Hepatitis B virus (HBV) is a major cause of human hepatitis. There is considerable
uncertainty about the timescale of its evolution and its association with humans. Here we …
uncertainty about the timescale of its evolution and its association with humans. Here we …
Measles virus and rinderpest virus divergence dated to the sixth century BCE
Many infectious diseases are thought to have emerged in humans after the Neolithic
revolution. Although it is broadly accepted that this also applies to measles, the exact date of …
revolution. Although it is broadly accepted that this also applies to measles, the exact date of …
Prisoners of war—host adaptation and its constraints on virus evolution
Recent discoveries of contemporary genotypes of hepatitis B virus and parvovirus B19 in
ancient human remains demonstrate that little genetic change has occurred in these viruses …
ancient human remains demonstrate that little genetic change has occurred in these viruses …
Bayesian evaluation of temporal signal in measurably evolving populations
Phylogenetic methods can use the sampling times of molecular sequence data to calibrate
the molecular clock, enabling the estimation of evolutionary rates and timescales for rapidly …
the molecular clock, enabling the estimation of evolutionary rates and timescales for rapidly …
Neolithic and medieval virus genomes reveal complex evolution of hepatitis B
The hepatitis B virus (HBV) is one of the most widespread human pathogens known today,
yet its origin and evolutionary history are still unclear and controversial. Here, we report the …
yet its origin and evolutionary history are still unclear and controversial. Here, we report the …
[HTML][HTML] Insights from deep sequencing of the HBV genome—unique, tiny, and misunderstood
Hepatitis B virus (HBV) is a unique, tiny, partially double-stranded, reverse-transcribing DNA
virus with proteins encoded by multiple overlapping reading frames. The substitution rate is …
virus with proteins encoded by multiple overlapping reading frames. The substitution rate is …
The recovery, interpretation and use of ancient pathogen genomes
The ability to sequence genomes from ancient biological material has provided a rich source
of information for evolutionary biology and engaged considerable public interest. Although …
of information for evolutionary biology and engaged considerable public interest. Although …