Cryo-electron tomography on focused ion beam lamellae transforms structural cell biology

C Berger, N Premaraj, RBG Ravelli, K Knoops… - Nature …, 2023 - nature.com
Cryogenic electron microscopy and data processing enable the determination of structures
of isolated macromolecules to near-atomic resolution. However, these data do not provide …

Bringing structure to cell biology with cryo-electron tomography

LN Young, E Villa - Annual review of biophysics, 2023 - annualreviews.org
Recent advances in cryo-electron microscopy have marked only the beginning of the
potential of this technique. To bring structure into cell biology, the modality of cryo-electron …

Parallel cryo electron tomography on in situ lamellae

F Eisenstein, H Yanagisawa, H Kashihara, M Kikkawa… - Nature …, 2023 - nature.com
In situ cryo electron tomography of cryo focused ion beam milled samples has emerged in
recent years as a powerful technique for structural studies of macromolecular complexes in …

In situ architecture of the ciliary base reveals the stepwise assembly of intraflagellar transport trains

H Van den Hoek, N Klena, MA Jordan, G Alvarez Viar… - Science, 2022 - science.org
The cilium is an antenna-like organelle that performs numerous cellular functions, including
motility, sensing, and signaling. The base of the cilium contains a selective barrier that …

Topaz-Denoise: general deep denoising models for cryoEM and cryoET

T Bepler, K Kelley, AJ Noble, B Berger - Nature communications, 2020 - nature.com
Cryo-electron microscopy (cryoEM) is becoming the preferred method for resolving protein
structures. Low signal-to-noise ratio (SNR) in cryoEM images reduces the confidence and …

Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells

DP Hoffman, G Shtengel, CS Xu, KR Campbell… - Science, 2020 - science.org
INTRODUCTION Our textbook understanding of the nanoscale organization of the cell and
its relationship to the thousands of proteins that drive cellular metabolism comes largely from …

Plasma FIB milling for the determination of structures in situ

C Berger, M Dumoux, T Glen, NB Yee… - Nature …, 2023 - nature.com
Structural biology studies inside cells and tissues require methods to thin vitrified specimens
to electron transparency. Until now, focused ion beams based on gallium have been used …

[HTML][HTML] The molecular basis for sarcomere organization in vertebrate skeletal muscle

Z Wang, M Grange, T Wagner, AL Kho, M Gautel… - Cell, 2021 - cell.com
Sarcomeres are force-generating and load-bearing devices of muscles. A precise molecular
picture of how sarcomeres are built underpins understanding their role in health and …

Convolutional networks for supervised mining of molecular patterns within cellular context

I de Teresa-Trueba, SK Goetz, A Mattausch… - Nature …, 2023 - nature.com
Cryo-electron tomograms capture a wealth of structural information on the molecular
constituents of cells and tissues. We present DeePiCt (deep picker in context), an open …

mTORC1 controls phase separation and the biophysical properties of the cytoplasm by tuning crowding

M Delarue, GP Brittingham, S Pfeffer, IV Surovtsev… - Cell, 2018 - cell.com
Macromolecular crowding has a profound impact on reaction rates and the physical
properties of the cell interior, but the mechanisms that regulate crowding are poorly …