Metabolomics as a tool to investigate abiotic stress tolerance in plants

V Arbona, M Manzi, C de Ollas… - International journal of …, 2013 - mdpi.com
Metabolites reflect the integration of gene expression, protein interaction and other different
regulatory processes and are therefore closer to the phenotype than mRNA transcripts or …

Vision, challenges and opportunities for a Plant Cell Atlas

SG Jha, AT Borowsky, BJ Cole, N Fahlgren, A Farmer… - Elife, 2021 - elifesciences.org
With growing populations and pressing environmental problems, future economies will be
increasingly plant-based. Now is the time to reimagine plant science as a critical component …

Selective autophagy of BES1 mediated by DSK2 balances plant growth and survival

TM Nolan, B Brennan, M Yang, J Chen, M Zhang, Z Li… - Developmental cell, 2017 - cell.com
Plants encounter a variety of stresses and must fine-tune their growth and stress-response
programs to best suit their environment. BES1 functions as a master regulator in the …

Root transcriptional dynamics induced by beneficial rhizobacteria and microbial immune elicitors reveal signatures of adaptation to mutualists

IA Stringlis, S Proietti, R Hickman… - The Plant …, 2018 - Wiley Online Library
Below ground, microbe‐associated molecular patterns (MAMP s) of root‐associated
microbiota can trigger costly defenses at the expense of plant growth. However, beneficial …

Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots

JM Alvarez, E Riveras, EA Vidal, DE Gras… - The Plant …, 2014 - Wiley Online Library
Nitrate acts as a potent signal to control global gene expression in A rabidopsis. Using an
integrative bioinformatics approach we identified TGA 1 and TGA 4 as putative regulatory …

Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade

JM Alvarez, AL Schinke, MD Brooks, A Pasquino… - Nature …, 2020 - nature.com
Dynamic reprogramming of gene regulatory networks (GRNs) enables organisms to rapidly
respond to environmental perturbation. However, the underlying transient interactions …

Novel roles for the polyphenol oxidase enzyme in secondary metabolism and the regulation of cell death in walnut

S Araji, TA Grammer, R Gertzen, SD Anderson… - Plant …, 2014 - academic.oup.com
The enzyme polyphenol oxidase (PPO) catalyzes the oxidation of phenolic compounds into
highly reactive quinones. Polymerization of PPO-derived quinones causes the postharvest …

Distinct signalling pathways and transcriptome response signatures differentiate ammonium‐and nitrate‐supplied plants

K Patterson, T Cakmak, A Cooper… - Plant, cell & …, 2010 - Wiley Online Library
Nitrogen is the only macronutrient that is commonly available to plants in both oxidized and
reduced forms, mainly nitrate and ammonium. The physiological and molecular effects of …

Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis

YO Zubo, IC Blakley, MV Yamburenko… - Proceedings of the …, 2017 - National Acad Sciences
The plant hormone cytokinin affects a diverse array of growth and development processes
and responses to the environment. How a signaling molecule mediates such a diverse array …

Dual role of the histone variant H2A. Z in transcriptional regulation of stress-response genes

W Sura, M Kabza, WM Karlowski, T Bieluszewski… - The Plant …, 2017 - academic.oup.com
The influence of the histone variant H2A. Z on transcription remains a long-standing
conundrum. Here, by analyzing the actin-related protein6 mutant, which is impaired in H2A …