dbCAN3: automated carbohydrate-active enzyme and substrate annotation
Carbohydrate active enzymes (CAZymes) are made by various organisms for complex
carbohydrate metabolism. Genome mining of CAZymes has become a routine data analysis …
carbohydrate metabolism. Genome mining of CAZymes has become a routine data analysis …
Profiling the human intestinal environment under physiological conditions
The spatiotemporal structure of the human microbiome,, proteome and metabolome, reflects
and determines regional intestinal physiology and may have implications for disease. Yet …
and determines regional intestinal physiology and may have implications for disease. Yet …
[HTML][HTML] Gut-microbiota-targeted diets modulate human immune status
HC Wastyk, GK Fragiadakis, D Perelman, D Dahan… - Cell, 2021 - cell.com
Diet modulates the gut microbiome, which in turn can impact the immune system. Here, we
determined how two microbiota-targeted dietary interventions, plant-based fiber and …
determined how two microbiota-targeted dietary interventions, plant-based fiber and …
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
Complex carbohydrates of plants are the main food sources of animals and microbes, and
serve as promising renewable feedstock for biofuel and biomaterial production …
serve as promising renewable feedstock for biofuel and biomaterial production …
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
The herbivore digestive tract is home to a complex community of anaerobic microbes that
work together to break down lignocellulose. These microbiota are an untapped resource of …
work together to break down lignocellulose. These microbiota are an untapped resource of …
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …
87 papers reporting on new databases and 85 updates from resources previously published …
dbCAN-seq update: CAZyme gene clusters and substrates in microbiomes
C arbohydrate A ctive En Zymes (CAZymes) are significantly important for microbial
communities to thrive in carbohydrate rich environments such as animal guts, agricultural …
communities to thrive in carbohydrate rich environments such as animal guts, agricultural …
Division of labor in honey bee gut microbiota for plant polysaccharide digestion
Bees acquire carbohydrates from nectar and lipids; and amino acids from pollen, which also
contains polysaccharides including cellulose, hemicellulose, and pectin. These potential …
contains polysaccharides including cellulose, hemicellulose, and pectin. These potential …
Microbiomes in the Challenger Deep slope and bottom-axis sediments
YL Zhou, P Mara, GJ Cui, VP Edgcomb… - Nature communications, 2022 - nature.com
Hadal trenches are the deepest and most remote regions of the ocean. The 11-kilometer
deep Challenger Deep is the least explored due to the technical challenges of sampling …
deep Challenger Deep is the least explored due to the technical challenges of sampling …
Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms
Soil microbial activity drives the carbon and nitrogen cycles and is an important determinant
of atmospheric trace gas turnover, yet most soils are dominated by microorganisms with …
of atmospheric trace gas turnover, yet most soils are dominated by microorganisms with …