[HTML][HTML] Reproducibility and replicability of rodent phenotyping in preclinical studies

N Kafkafi, J Agassi, EJ Chesler, JC Crabbe… - Neuroscience & …, 2018 - Elsevier
The scientific community is increasingly concerned with the proportion of published
“discoveries” that are not replicated in subsequent studies. The field of rodent behavioral …

The phenotypic legacy of admixture between modern humans and Neandertals

CN Simonti, B Vernot, L Bastarache, E Bottinger… - Science, 2016 - science.org
Many modern human genomes retain DNA inherited from interbreeding with archaic
hominins, such as Neandertals, yet the influence of this admixture on human traits is largely …

Reproducing statistical results

V Stodden - Annual Review of Statistics and Its Application, 2015 - annualreviews.org
The reproducibility of statistical findings has become a concern not only for statisticians, but
for all researchers engaged in empirical discovery. Section 2 of this article identifies key …

Irreproducibility in hydrogen storage material research

DP Broom, M Hirscher - Energy & Environmental Science, 2016 - pubs.rsc.org
The storage of hydrogen in materials has received a significant amount of attention in recent
years because this approach is widely thought to be one of the most promising solutions to …

PCSK9 Loss-of-Function Variants, Low-Density Lipoprotein Cholesterol, and Risk of Coronary Heart Disease and Stroke: Data From 9 Studies of Blacks and Whites

ST Kent, RS Rosenson, CL Avery… - Circulation …, 2017 - Am Heart Assoc
Background—PCSK9 loss-of-function (LOF) variants allow for the examination of the effects
of lifetime reduced low-density lipoprotein cholesterol (LDL-C) on cardiovascular events. We …

Replicability analysis for natural language processing: Testing significance with multiple datasets

R Dror, G Baumer, M Bogomolov… - Transactions of the …, 2017 - direct.mit.edu
With the ever growing amount of textual data from a large variety of languages, domains,
and genres, it has become standard to evaluate NLP algorithms on multiple datasets in …

Covariate-assisted ranking and screening for large-scale two-sample inference

T Tony Cai, W Sun, W Wang - Journal of the Royal Statistical …, 2019 - academic.oup.com
Two-sample multiple testing has a wide range of applications. The conventional practice first
reduces the original observations to a vector of p-values and then chooses a cut-off to adjust …

Nucleated red blood cells explain most of the association between DNA methylation and gestational age

KL Haftorn, WRP Denault, Y Lee, CM Page… - Communications …, 2023 - nature.com
Determining if specific cell type (s) are responsible for an association between DNA
methylation (DNAm) and a given phenotype is important for understanding the biological …

Training replicable predictors in multiple studies

P Patil, G Parmigiani - … of the National Academy of Sciences, 2018 - National Acad Sciences
This article considers replicability of the performance of predictors across studies. We
suggest a general approach to investigating this issue, based on ensembles of prediction …

Genome-wide association study of platelet count identifies ancestry-specific loci in Hispanic/Latino Americans

UM Schick, D Jain, CJ Hodonsky, JV Morrison… - The American Journal of …, 2016 - cell.com
Platelets play an essential role in hemostasis and thrombosis. We performed a genome-
wide association study of platelet count in 12,491 participants of the Hispanic Community …