Best practices for variant calling in clinical sequencing

DC Koboldt - Genome Medicine, 2020 - Springer
Next-generation sequencing technologies have enabled a dramatic expansion of clinical
genetic testing both for inherited conditions and diseases such as cancer. Accurate variant …

Autism genetics: opportunities and challenges for clinical translation

JAS Vorstman, JR Parr, D Moreno-De-Luca… - Nature Reviews …, 2017 - nature.com
Genetic studies have revealed the involvement of hundreds of gene variants in autism. Their
risk effects are highly variable, and they are frequently related to other conditions besides …

Evolution of the germline mutation rate across vertebrates

LA Bergeron, S Besenbacher, J Zheng, P Li… - Nature, 2023 - nature.com
The germline mutation rate determines the pace of genome evolution and is an evolving
parameter itself. However, little is known about what determines its evolution, as most …

Differences between germline and somatic mutation rates in humans and mice

B Milholland, X Dong, L Zhang, X Hao, Y Suh… - Nature …, 2017 - nature.com
The germline mutation rate has been extensively studied and has been found to vary greatly
between species, but much less is known about the somatic mutation rate in multicellular …

New insights into the generation and role of de novo mutations in health and disease

R Acuna-Hidalgo, JA Veltman, A Hoischen - Genome biology, 2016 - Springer
Aside from inheriting half of the genome of each of our parents, we are born with a small
number of novel mutations that occurred during gametogenesis and postzygotically. Recent …

Circular DNA elements of chromosomal origin are common in healthy human somatic tissue

HD Møller, M Mohiyuddin, I Prada-Luengo… - Nature …, 2018 - nature.com
The human genome is generally organized into stable chromosomes, and only tumor cells
are known to accumulate kilobase (kb)-sized extrachromosomal circular DNA elements …

The need for a human pangenome reference sequence

KH Miga, T Wang - Annual Review of Genomics and Human …, 2021 - annualreviews.org
The reference human genome sequence is inarguably the most important and widely used
resource in the fields of human genetics and genomics. It has transformed the conduct of …

Next-generation sequencing in Charcot–Marie–Tooth disease: opportunities and challenges

M Pipis, AM Rossor, M Laura, MM Reilly - Nature Reviews Neurology, 2019 - nature.com
Abstract Charcot–Marie–Tooth disease and the related disorders hereditary motor
neuropathy and hereditary sensory neuropathy, collectively termed CMT, are the …

Mutation and human exceptionalism: our future genetic load

M Lynch - Genetics, 2016 - academic.oup.com
Although the human germline mutation rate is higher than that in any other well-studied
species, the rate is not exceptional once the effective genome size and effective population …

Understanding 6th-century barbarian social organization and migration through paleogenomics

CEG Amorim, S Vai, C Posth, A Modi, I Koncz… - Nature …, 2018 - nature.com
Despite centuries of research, much about the barbarian migrations that took place between
the fourth and sixth centuries in Europe remains hotly debated. To better understand this key …