Profiling genome-wide DNA methylation

WS Yong, FM Hsu, PY Chen - Epigenetics & chromatin, 2016 - Springer
DNA methylation is an epigenetic modification that plays an important role in regulating
gene expression and therefore a broad range of biological processes and diseases. DNA …

TET (Ten-eleven translocation) family proteins: structure, biological functions and applications

X Zhang, Y Zhang, C Wang, X Wang - Signal Transduction and …, 2023 - nature.com
Ten-eleven translocation (TET) family proteins (TETs), specifically, TET1, TET2 and TET3,
can modify DNA by oxidizing 5-methylcytosine (5mC) iteratively to yield 5 …

Epigenetic modification of nucleic acids: from basic studies to medical applications

Y Chen, T Hong, S Wang, J Mo, T Tian… - Chemical Society …, 2017 - pubs.rsc.org
The epigenetic modification of nucleic acids represents one of the most significant areas of
study in the field of nucleic acids because it makes gene regulation more complex and …

Roles and regulations of TET enzymes in solid tumors

JK Bray, MM Dawlaty, A Verma, A Maitra - Trends in cancer, 2021 - cell.com
The mechanisms governing the methylome profile of tumor suppressors and oncogenes
have expanded with the discovery of oxidized states of 5-methylcytosine (5mC). Ten-eleven …

[HTML][HTML] 5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients

KC Johnson, EA Houseman, JE King… - Nature …, 2016 - nature.com
Glioblastomas exhibit widespread molecular alterations including a highly distorted
epigenome. Here, we resolve genome-wide 5-methylcytosine and 5-hydroxymethylcytosine …

Single-cell sequencing for precise cancer research: progress and prospects

X Zhang, SL Marjani, Z Hu, SM Weissman, X Pan… - Cancer Research, 2016 - AACR
Advances in genomic technology have enabled the faithful detection and measurement of
mutations and the gene expression profile of cancer cells at the single-cell level. Recently …

[HTML][HTML] Current advances in detecting genetic and epigenetic biomarkers of colorectal cancer

MS Islam, V Gopalan, AK Lam, MJA Shiddiky - Biosensors and …, 2023 - Elsevier
Colorectal carcinoma (CRC) is the third most common cancer in terms of diagnosis and the
second in terms of mortality. Recent studies have shown that various proteins, extracellular …

TET-mediated hypermethylation primes SDH-deficient cells for HIF2α-driven mesenchymal transition

A Morin, J Goncalves, S Moog, LJ Castro-Vega, S Job… - Cell reports, 2020 - cell.com
Loss-of-function mutations in the SDHB subunit of succinate dehydrogenase predispose
patients to aggressive tumors characterized by pseudohypoxic and hypermethylator …

Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver

X Li, Y Liu, T Salz, KD Hansen, A Feinberg - Genome research, 2016 - genome.cshlp.org
DNA methylation at the 5-position of cytosine (5mC) is an epigenetic modification that
regulates gene expression and cellular plasticity in development and disease. The ten …

The role of 5-hydroxymethylcytosine in development, aging and age-related diseases

V López, AF Fernández, MF Fraga - Ageing Research Reviews, 2017 - Elsevier
DNA methylation at the fifth position of cytosines (5mC) represents a major epigenetic
modification in mammals. The recent discovery of 5-hydroxymethylcytosine (5hmC) …