A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …

Pathogen‐informed breeding for crop disease resistance

Q Li, B Wang, J Yu, D Dou - Journal of integrative plant biology, 2021 - Wiley Online Library
The development of durable and broad‐spectrum resistance is an economical and eco‐
friendly approach to control crop diseases for sustainable agricultural production. Emerging …

A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector

K Witek, X Lin, HS Karki, F Jupe, AI Witek… - Nature Plants, 2021 - nature.com
Late blight caused by Phytophthora infestans greatly constrains potato production. Many
Resistance (R) genes were cloned from wild Solanum species and/or introduced into potato …

Rapid evolution in plant–microbe interactions–an evolutionary genomics perspective

S de Vries, EH Stukenbrock, LE Rose - New Phytologist, 2020 - Wiley Online Library
Access to greater genomic resolution through new sequencing technologies is transforming
the field of plant pathology. As scientists embrace these new methods, some overarching …

A single region of the Phytophthora infestans avirulence effector Avr3b functions in both cell death induction and plant immunity suppression

B Gu, W Gao, Z Liu, G Shao, Q Peng… - Molecular Plant …, 2023 - Wiley Online Library
As a destructive plant pathogen, Phytophthora infestans secretes diverse host‐entering
RxLR effectors to facilitate infection. One critical RxLR effector, PiAvr3b, not only induces …

Albugo candida race diversity, ploidy and host‐associated microbes revealed using DNA sequence capture on diseased plants in the field

A Jouet, DGO Saunders, M McMullan, B Ward… - New …, 2019 - Wiley Online Library
Physiological races of the oomycete Albugo candida are biotrophic pathogens of diverse
plant species, primarily the Brassicaceae, and cause infections that suppress host immunity …

RLP/K enrichment sequencing; a novel method to identify receptor‐like protein (RLP) and receptor‐like kinase (RLK) genes

X Lin, M Armstrong, K Baker, D Wouters… - New …, 2020 - Wiley Online Library
The identification of immune receptors in crop plants is time‐consuming but important for
disease control. Previously, resistance gene enrichment sequencing (RenSeq) was …

“Core” RxLR effectors in phytopathogenic oomycetes: A promising way to breeding for durable resistance in plants?

J Chepsergon, TE Motaung, LN Moleleki - Virulence, 2021 - Taylor & Francis
Phytopathogenic oomycetes are known to successfully infect their hosts due to their ability to
secrete effector proteins. Of interest to many researchers are effectors with the N-terminal …

Stacking resistance genes in multiparental interspecific potato hybrids to anticipate late blight outbreaks

EV Rogozina, MP Beketova, OA Muratova… - Agronomy, 2021 - mdpi.com
Stacking (pyramiding) several resistance genes of diverse race specificity in one and the
same plant by hybridization provides for high and durable resistance to major diseases …

Fantastic downy mildew pathogens and how to find them: advances in detection and diagnostics

AF Salcedo, S Purayannur, JR Standish, T Miles… - Plants, 2021 - mdpi.com
Downy mildews affect important crops and cause severe losses in production worldwide.
Accurate identification and monitoring of these plant pathogens, especially at early stages of …