Emerging trends in post-translational modification: Shedding light on Glioblastoma multiforme

S Kumari, R Gupta, RK Ambasta, P Kumar - Biochimica et Biophysica Acta …, 2023 - Elsevier
Recent multi-omics studies, including proteomics, transcriptomics, genomics, and
metabolomics have revealed the critical role of post-translational modifications (PTMs) in the …

Current computational tools for protein lysine acylation site prediction

Z Qin, H Ren, P Zhao, K Wang, H Liu… - Briefings in …, 2024 - academic.oup.com
As a main subtype of post-translational modification (PTM), protein lysine acylations (PLAs)
play crucial roles in regulating diverse functions of proteins. With recent advancements in …

Advancing aspect-based sentiment analysis with a novel architecture combining deep learning models CNN and bi-RNN with the machine learning model SVM

S Hammi, SM Hammami, LH Belguith - Social Network Analysis and …, 2023 - Springer
Over the last decades, the aspect-based sentiment analysis (ABSA) task has been given
great attention and has been deeply studied by the scientific community. It was first …

Deepro-Glu: combination of convolutional neural network and Bi-LSTM models using ProtBert and handcrafted features to identify lysine glutarylation sites

X Wang, Z Ding, R Wang, X Lin - Briefings in Bioinformatics, 2023 - academic.oup.com
Lysine glutarylation (Kglu) is a newly discovered post-translational modification of proteins
with important roles in mitochondrial functions, oxidative damage, etc. The established …

DeepDN_iGlu: prediction of lysine glutarylation sites based on attention residual learning method and DenseNet.

J Jia, M Sun, G Wu, W Qiu - Mathematical Biosciences and …, 2022 - europepmc.org
As a key issue in orchestrating various biological processes and functions, protein post-
translational modification (PTM) occurs widely in the mechanism of protein's function of …

The predictive role of subcutaneous adipose tissue in the pathogenesis of obstructive sleep apnoea

V Molnár, Z Lakner, A Molnár, DL Tárnoki, ÁD Tárnoki… - Life, 2022 - mdpi.com
Simple Summary Although several methods are used to diagnose obstructive sleep apnoea
(OSA), the disorder is still underdiagnosed, leading to public healthcare problems. The main …

[HTML][HTML] DeepQSP: Identification of Quorum Sensing Peptides Through Neural Network Model

MA Rahman, MM Ali, K Ahmed, I Mahmud, FM Bui… - Results in …, 2024 - Elsevier
Abstract Quorum Sensing Peptides (QSP) are small molecules crucial for microbial
communication, enabling bacterial populations to coordinate behaviors such as biofilm …

Protein sequence classification using bidirectional encoder representations from transformers (Bert) approach

R Balamurugan, S Mohite, SP Raja - SN Computer Science, 2023 - Springer
Proteins play a vital role by booming out a number of activities within an organism to
withstand its life. The field of Natural Language Processing has successfully adapted deep …

[HTML][HTML] A self-supervised embedding of cell migration features for behavior discovery over cell populations

M Molina-Moreno, I González-Díaz, R Mikut… - Computer Methods and …, 2024 - Elsevier
Background and objective: Recent studies point out that the dynamics and interaction of cell
populations within their environment are related to several biological processes in …

Improvements in viral gene annotation using large language models and soft alignments

WL Harrigan, BD Ferrell, KE Wommack, SW Polson… - BMC …, 2024 - Springer
Background The annotation of protein sequences in public databases has long posed a
challenge in molecular biology. This issue is particularly acute for viral proteins, which …