[HTML][HTML] Codon usage bias regulates gene expression and protein conformation in yeast expression system P. pastoris

Y Xu, K Liu, Y Han, Y Xing, Y Zhang, Q Yang… - Microbial Cell …, 2021 - Springer
Background Protein synthesis is one of the extremely important anabolic pathways in the
yeast expression system Pichia pastoris. Codon optimization is a commonly adopted …

A detailed comparative analysis of codon usage bias in Alongshan virus

SU Rahman, M Abdullah, AW Khan, MIU Haq, N ul Haq… - Virus Research, 2022 - Elsevier
Alongshan virus (ALSV) is an emerging tick-borne pathogen that infects humans, causing
febrile disease. ALSV uses Ixodes Persulcatus ticks to infect humans with a wide range of …

Analysis of codon usage bias of Crimean-Congo hemorrhagic fever virus and its adaptation to hosts

SU Rahman, X Yao, X Li, D Chen, S Tao - Infection, Genetics and Evolution, 2018 - Elsevier
Crimean-Congo hemorrhagic fever virus (CCHFV) is a negative-sense, single stranded RNA
virus with a three-segmented genome that belongs to the genus Nairovirus within the family …

[HTML][HTML] Quantifying shifts in natural selection on codon usage between protein regions: a population genetics approach

AL Cope, MA Gilchrist - BMC genomics, 2022 - Springer
Background Codon usage bias (CUB), the non-uniform usage of synonymous codons,
occurs across all domains of life. Adaptive CUB is hypothesized to result from various …

[HTML][HTML] Quantifying codon usage in signal peptides: Gene expression and amino acid usage explain apparent selection for inefficient codons

AL Cope, RL Hettich, MA Gilchrist - Biochimica et Biophysica Acta (BBA) …, 2018 - Elsevier
The Sec secretion pathway is found across all domains of life. A critical feature of Sec
secreted proteins is the signal peptide, a short peptide with distinct physicochemical …

Codon usage bias of secretory protein in Fusarium oxysporum f. sp. cubense tropical race 4

H Fang, M Li, S Yu, J Sun, Z Qin - Journal of Basic Microbiology, 2024 - Wiley Online Library
Banana Fusarium oxysporum f. sp. cubense tropical race 4 (Foc‐TR4) is a highly destructive
pathogen that infects nearly all major banana cultivars and has a tendency to spread further …

[HTML][HTML] A comprehensive analysis of the phylogenetic signal in ramp sequences in 211 vertebrates

LM McKinnon, JB Miller, MF Whiting, JSK Kauwe… - Scientific Reports, 2021 - nature.com
Ramp sequences increase translational speed and accuracy when rare, slowly-translated
codons are found at the beginnings of genes. Here, the results of the first analysis of ramp …

De novo transcriptome assembly and analysis of the codon usage bias of the MADS-box gene family in Cymbidium kanran

H Luo, Y Tao, W Yu, L Luo, B Yang - Indian Journal of Genetics and Plant …, 2019 - isgpb.org
Cymbidium kanran is an important commercially grown member of the Chinese orchid
family. However, little information regarding the molecular biology of this species is …

A conserved translation factor is required for optimal synthesis of a membrane protein family in mycobacteria

SRS Fishbein, ID Wolf, CL Dulberger, A Wang… - bioRxiv, 2019 - biorxiv.org
Ribosomes require the activity of associated GTPases to synthesize proteins. Despite strong
evolutionary conservation, the roles of many of these remain unknown. For example, LepA …

[图书][B] The Evolutionary and Functional Roles of Synonymous Codon Usage in Eukaryotes

Z Peng - 2019 - search.proquest.com
Most amino acids are encoded by multiple synonymous codons. Although alternative usage
of synonymous codons does not affect the amino acid sequences of proteins, researchers …