Deep reticulation: the long legacy of hybridization in vascular plant evolution

GW Stull, KK Pham, PS Soltis, DE Soltis - The Plant Journal, 2023 - Wiley Online Library
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …

Phylogenetic relationships and evolutionary trends in the cactus family

PC Guerrero, LC Majure, A Cornejo-Romero… - Journal of …, 2019 - academic.oup.com
Members of the cactus family are keystone species of arid and semiarid biomes in the
Americas, as they provide shelter and resources to support other members of ecosystems …

A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering

MG Johnson, L Pokorny, S Dodsworth… - Systematic …, 2019 - academic.oup.com
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …

[HTML][HTML] Phylogenomics and the rise of the angiosperms

AR Zuntini, T Carruthers, O Maurin, PC Bailey… - Nature, 2024 - nature.com
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods,. A
robust understanding of angiosperm evolution is required to explain their rise to ecological …

Exploration of plastid phylogenomic conflict yields new insights into the deep relationships of Leguminosae

R Zhang, YH Wang, JJ Jin, GW Stull… - Systematic …, 2020 - academic.oup.com
Phylogenomic analyses have helped resolve many recalcitrant relationships in the
angiosperm tree of life, yet phylogenetic resolution of the backbone of the Leguminosae …

Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms

GW Stull, XJ Qu, C Parins-Fukuchi, YY Yang, JB Yang… - Nature Plants, 2021 - nature.com
Inferring the intrinsic and extrinsic drivers of species diversification and phenotypic disparity
across the tree of life is a major challenge in evolutionary biology. In green plants, polyploidy …

Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in Amaranthaceae sl

DF Morales-Briones, G Kadereit, DT Tefarikis… - Systematic …, 2021 - academic.oup.com
Gene tree discordance in large genomic data sets can be caused by evolutionary processes
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …

[HTML][HTML] A plastid phylogenomic framework for the palm family (Arecaceae)

G Yao, YQ Zhang, C Barrett, B Xue, S Bellot, WJ Baker… - BMC biology, 2023 - Springer
Background Over the past decade, phylogenomics has greatly advanced our knowledge of
angiosperm evolution. However, phylogenomic studies of large angiosperm families with …

Plastid phylogenomic insights into the evolution of Caryophyllales

G Yao, JJ Jin, HT Li, JB Yang, VS Mandala… - Molecular Phylogenetics …, 2019 - Elsevier
The Caryophyllales includes 40 families and 12,500 species, representing a large and
diverse clade of angiosperms. Collectively, members of the clade grow on all continents and …

[HTML][HTML] Research progress of betalain in response to adverse stresses and evolutionary relationship compared with anthocyanin

G Li, X Meng, M Zhu, Z Li - Molecules, 2019 - mdpi.com
Betalains are applicable to many aspects of life, and their properties, characteristics,
extraction and biosynthesis process have been thoroughly studied. Although betalains are …