CTCF shapes chromatin structure and gene expression in health and disease
B Dehingia, M Milewska, M Janowski, A Pękowska - EMBO reports, 2022 - embopress.org
CCCTC‐binding factor (CTCF) is an eleven zinc finger (ZF), multivalent transcriptional
regulator, that recognizes numerous motifs thanks to the deployment of distinct combinations …
regulator, that recognizes numerous motifs thanks to the deployment of distinct combinations …
Structural variations in cancer and the 3D genome
F Dubois, N Sidiropoulos, J Weischenfeldt… - Nature Reviews …, 2022 - nature.com
Structural variations (SVs) affect more of the cancer genome than any other type of somatic
genetic alteration but difficulties in detecting and interpreting them have limited our …
genetic alteration but difficulties in detecting and interpreting them have limited our …
[HTML][HTML] The co-evolution of the genome and epigenome in colorectal cancer
T Heide, J Househam, GD Cresswell, I Spiteri, C Lynn… - Nature, 2022 - nature.com
Colorectal malignancies are a leading cause of cancer-related death and have undergone
extensive genomic study,. However, DNA mutations alone do not fully explain malignant …
extensive genomic study,. However, DNA mutations alone do not fully explain malignant …
Long-range gene regulation in hormone-dependent cancer
The human genome is organized into multiple structural layers, ranging from chromosome
territories to progressively smaller substructures, such as topologically associating domains …
territories to progressively smaller substructures, such as topologically associating domains …
Acute depletion of CTCF directly affects MYC regulation through loss of enhancer–promoter looping
Numerous pieces of evidence support the complex, 3D spatial organization of the genome
dictates gene expression. CTCF is essential to define topologically associated domain …
dictates gene expression. CTCF is essential to define topologically associated domain …
[HTML][HTML] Guarding the genome: CENP-A-chromatin in health and cancer
MA Mahlke, Y Nechemia-Arbely - Genes, 2020 - mdpi.com
Faithful chromosome segregation is essential for the maintenance of genomic integrity and
requires functional centromeres. Centromeres are epigenetically defined by the histone H3 …
requires functional centromeres. Centromeres are epigenetically defined by the histone H3 …
[HTML][HTML] Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia
M Yang, M Vesterlund, I Siavelis… - Nature …, 2019 - nature.com
Hyperdiploidy, ie gain of whole chromosomes, is one of the most common genetic features
of childhood acute lymphoblastic leukemia (ALL), but its pathogenetic impact is poorly …
of childhood acute lymphoblastic leukemia (ALL), but its pathogenetic impact is poorly …
[HTML][HTML] Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains
E Kentepozidou, SJ Aitken, C Feig, K Stefflova… - Genome biology, 2020 - Springer
Background CTCF binding contributes to the establishment of a higher-order genome
structure by demarcating the boundaries of large-scale topologically associating domains …
structure by demarcating the boundaries of large-scale topologically associating domains …
[HTML][HTML] Chromosome structural variation in tumorigenesis: mechanisms of formation and carcinogenesis
WJ Wang, LY Li, JW Cui - Epigenetics & chromatin, 2020 - Springer
With the rapid development of next-generation sequencing technology, chromosome
structural variation has gradually gained increased clinical significance in tumorigenesis …
structural variation has gradually gained increased clinical significance in tumorigenesis …
[HTML][HTML] Using chemical epigenetics to target cancer
Transcription is epigenetically regulated by the orchestrated function of chromatin-binding
proteins that tightly control the expression of master transcription factors, effectors, and …
proteins that tightly control the expression of master transcription factors, effectors, and …