CTCF shapes chromatin structure and gene expression in health and disease

B Dehingia, M Milewska, M Janowski, A Pękowska - EMBO reports, 2022 - embopress.org
CCCTC‐binding factor (CTCF) is an eleven zinc finger (ZF), multivalent transcriptional
regulator, that recognizes numerous motifs thanks to the deployment of distinct combinations …

Structural variations in cancer and the 3D genome

F Dubois, N Sidiropoulos, J Weischenfeldt… - Nature Reviews …, 2022 - nature.com
Structural variations (SVs) affect more of the cancer genome than any other type of somatic
genetic alteration but difficulties in detecting and interpreting them have limited our …

[HTML][HTML] The co-evolution of the genome and epigenome in colorectal cancer

T Heide, J Househam, GD Cresswell, I Spiteri, C Lynn… - Nature, 2022 - nature.com
Colorectal malignancies are a leading cause of cancer-related death and have undergone
extensive genomic study,. However, DNA mutations alone do not fully explain malignant …

Long-range gene regulation in hormone-dependent cancer

TT Tettey, L Rinaldi, GL Hager - Nature Reviews Cancer, 2023 - nature.com
The human genome is organized into multiple structural layers, ranging from chromosome
territories to progressively smaller substructures, such as topologically associating domains …

Acute depletion of CTCF directly affects MYC regulation through loss of enhancer–promoter looping

J Hyle, Y Zhang, S Wright, B Xu, Y Shao… - Nucleic acids …, 2019 - academic.oup.com
Numerous pieces of evidence support the complex, 3D spatial organization of the genome
dictates gene expression. CTCF is essential to define topologically associated domain …

[HTML][HTML] Guarding the genome: CENP-A-chromatin in health and cancer

MA Mahlke, Y Nechemia-Arbely - Genes, 2020 - mdpi.com
Faithful chromosome segregation is essential for the maintenance of genomic integrity and
requires functional centromeres. Centromeres are epigenetically defined by the histone H3 …

[HTML][HTML] Proteogenomics and Hi-C reveal transcriptional dysregulation in high hyperdiploid childhood acute lymphoblastic leukemia

M Yang, M Vesterlund, I Siavelis… - Nature …, 2019 - nature.com
Hyperdiploidy, ie gain of whole chromosomes, is one of the most common genetic features
of childhood acute lymphoblastic leukemia (ALL), but its pathogenetic impact is poorly …

[HTML][HTML] Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains

E Kentepozidou, SJ Aitken, C Feig, K Stefflova… - Genome biology, 2020 - Springer
Background CTCF binding contributes to the establishment of a higher-order genome
structure by demarcating the boundaries of large-scale topologically associating domains …

[HTML][HTML] Chromosome structural variation in tumorigenesis: mechanisms of formation and carcinogenesis

WJ Wang, LY Li, JW Cui - Epigenetics & chromatin, 2020 - Springer
With the rapid development of next-generation sequencing technology, chromosome
structural variation has gradually gained increased clinical significance in tumorigenesis …

[HTML][HTML] Using chemical epigenetics to target cancer

VK Wimalasena, T Wang, LH Sigua, AD Durbin, J Qi - Molecular cell, 2020 - cell.com
Transcription is epigenetically regulated by the orchestrated function of chromatin-binding
proteins that tightly control the expression of master transcription factors, effectors, and …