Network neuroscience

DS Bassett, O Sporns - Nature neuroscience, 2017 - nature.com
Despite substantial recent progress, our understanding of the principles and mechanisms
underlying complex brain function and cognition remains incomplete. Network neuroscience …

Computational systems biology

H Kitano - Nature, 2002 - nature.com
To understand complex biological systems requires the integration of experimental and
computational research—in other words a systems biology approach. Computational …

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience

RA McDougal, TM Morse, T Carnevale… - Journal of computational …, 2017 - Springer
Neuron modeling may be said to have originated with the Hodgkin and Huxley action
potential model in 1952 and Rall's models of integrative activity of dendrites in 1964. Over …

Vision, challenges and opportunities for a Plant Cell Atlas

SG Jha, AT Borowsky, BJ Cole, N Fahlgren, A Farmer… - Elife, 2021 - elifesciences.org
With growing populations and pressing environmental problems, future economies will be
increasingly plant-based. Now is the time to reimagine plant science as a critical component …

Fast, efficient, and accurate neuro-imaging denoising via supervised deep learning

S Chaudhary, S Moon, H Lu - Nature communications, 2022 - nature.com
Volumetric functional imaging is widely used for recording neuron activities in vivo, but there
exist tradeoffs between the quality of the extracted calcium traces, imaging speed, and laser …

OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans

GP Sarma, CW Lee, T Portegys… - … of the Royal …, 2018 - royalsocietypublishing.org
The adoption of powerful software tools and computational methods from the software
industry by the scientific research community has resulted in a renewed interest in …

Is realistic neuronal modeling realistic?

M Almog, A Korngreen - Journal of neurophysiology, 2016 - journals.physiology.org
Scientific models are abstractions that aim to explain natural phenomena. A successful
model shows how a complex phenomenon arises from relatively simple principles while …

The self-assembling brain: how neural networks grow smarter

PR Hiesinger - 2021 - torrossa.com
There are easier things to make than a brain. Driven by the promise and resources of
biomedical research, developmental neurobiologists are trying to understand how it is done …

[HTML][HTML] Open source brain: a collaborative resource for visualizing, analyzing, simulating, and developing standardized models of neurons and circuits

P Gleeson, M Cantarelli, B Marin, A Quintana… - Neuron, 2019 - cell.com
Computational models are powerful tools for exploring the properties of complex biological
systems. In neuroscience, data-driven models of neural circuits that span multiple scales are …

Tracking calcium dynamics from individual neurons in behaving animals

T Lagache, A Hanson, JE Pérez-Ortega… - PLoS computational …, 2021 - journals.plos.org
Measuring the activity of neuronal populations with calcium imaging can capture emergent
functional properties of neuronal circuits with single cell resolution. However, the motion of …