Proteingym: Large-scale benchmarks for protein fitness prediction and design

P Notin, A Kollasch, D Ritter… - Advances in …, 2024 - proceedings.neurips.cc
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins to address our most pressing …

Advanced strategies for enzyme–electrode interfacing in bioelectrocatalytic systems

H Lee, SS Reginald, JS Sravan, M Lee… - Trends in Biotechnology, 2024 - cell.com
Advances in protein engineering-enabled enzyme immobilization technologies have
significantly improved enzyme–electrode wiring in enzymatic electrochemical systems …

[HTML][HTML] Proteingym: Large-scale benchmarks for protein design and fitness prediction

P Notin, AW Kollasch, D Ritter, L van Niekerk, S Paul… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins that can address our most …

Enzoology: understanding enzyme interactions and epistasis in the cell

A Savinov - Trends in Biochemical Sciences, 2024 - cell.com
Recent work from Nguyen et al. unveils massively parallel measurements of epistatic
interactions between two enzymes, dihydrofolate reductase and thymidylate synthase, in …

Efficacy and safety of pegylated liposomal doxorubicin and epirubicin as neoadjuvant chemotherapy for breast cancer

Y Shen, Q Hua, M Dong, W Jin, X Hu… - Frontiers in Cell and …, 2024 - frontiersin.org
Aim This study aims to compare the efficiencies and toxicities of pegylated liposomal
doxorubicin (PLD) based and epirubicin based chemotherapeutic regimens as neoadjuvant …

Large language models for biological prediction and design

AW Kollasch - 2023 - search.proquest.com
Predicting the functional impact of changes to biological sequences is a central challenge in
genetics and biology. Beyond genetics, sequence-to-function mapping has key applications …

Effects of residue substitutions on the cellular abundance of proteins

TK Schulze, K Lindorff-Larsen - bioRxiv, 2024 - biorxiv.org
Multiplexed assays of variant effects (MAVEs) make it possible to measure the functional
impact of all possible single amino acid residue substitutions in a protein in a single …

Modelling Sequence and Structure Towards Functional Protein Design

SB Paul - 2024 - search.proquest.com
Millenia of evolutionary experiments have produced an extensive universe of natural
macromolecular machines-proteins-that perform the variety of complex functions needed to …