Metal ion modeling using classical mechanics
P Li, KM Merz Jr - Chemical reviews, 2017 - ACS Publications
Metal ions play significant roles in numerous fields including chemistry, geochemistry,
biochemistry, and materials science. With computational tools increasingly becoming …
biochemistry, and materials science. With computational tools increasingly becoming …
[PDF][PDF] Ab initio molecular dynamics: Theory and implementation
D Marx, J Hutter - Modern methods and algorithms of quantum …, 2000 - juser.fz-juelich.de
Up to this point, the electronic structure method to calculate the ab initio forces rIh jHej i was
not speci ed in detail. It is immediately clear that ab initio molecular dynamics is not tied to …
not speci ed in detail. It is immediately clear that ab initio molecular dynamics is not tied to …
Systematic parameterization of monovalent ions employing the nonbonded model
Monovalent ions play fundamental roles in many biological processes in organisms.
Modeling these ions in molecular simulations continues to be a challenging problem. The 12 …
Modeling these ions in molecular simulations continues to be a challenging problem. The 12 …
How ions affect the structure of water
B Hribar, NT Southall, V Vlachy… - Journal of the American …, 2002 - ACS Publications
We model ion solvation in water. We use the MB model of water, a simple two-dimensional
statistical mechanical model in which waters are represented as Lennard-Jones disks …
statistical mechanical model in which waters are represented as Lennard-Jones disks …
Hydration of sodium, potassium, and chloride ions in solution and the concept of structure maker/breaker
R Mancinelli, A Botti, F Bruni, MA Ricci… - The Journal of Physical …, 2007 - ACS Publications
Neutron diffraction data with hydrogen isotope substitution on aqueous solutions of NaCl
and KCl at concentrations ranging from high dilution to near-saturation are analyzed using …
and KCl at concentrations ranging from high dilution to near-saturation are analyzed using …
Ions at the air/water interface
P Jungwirth, DJ Tobias - The Journal of Physical Chemistry B, 2002 - ACS Publications
We present results from theoretical studies of aqueous ionic solvation of alkali halides aimed
at developing a microscopic description of structure and dynamics at the interface between …
at developing a microscopic description of structure and dynamics at the interface between …
Ab initio molecular dynamics: Propagating the density matrix with Gaussian orbitals
HB Schlegel, JM Millam, SS Iyengar, GA Voth… - The Journal of …, 2001 - pubs.aip.org
We propose and implement an alternative approach to the original Car–Parrinello method
where the density matrix elements (instead of the molecular orbitals) are propagated …
where the density matrix elements (instead of the molecular orbitals) are propagated …
Ab initio molecular dynamics: Propagating the density matrix with Gaussian orbitals. II. Generalizations based on mass-weighting, idempotency, energy conservation …
SS Iyengar, HB Schlegel, JM Millam… - The Journal of …, 2001 - pubs.aip.org
A generalization is presented here for a newly developed approach to ab initio molecular
dynamics, where the density matrix is propagated with Gaussian orbitals. Including a …
dynamics, where the density matrix is propagated with Gaussian orbitals. Including a …
Absolute hydration free energy scale for alkali and halide ions established from simulations with a polarizable force field
G Lamoureux, B Roux - The journal of physical chemistry B, 2006 - ACS Publications
A polarizable potential function for the hydration of alkali and halide ions is developed on
the basis of the recent SWM4-DP water model [Lamoureux, G.; MacKerell, AD, Jr.; Roux, BJ …
the basis of the recent SWM4-DP water model [Lamoureux, G.; MacKerell, AD, Jr.; Roux, BJ …
Coordination numbers of alkali metal ions in aqueous solutions
The level of complexity with which any biological ion interaction mechanism can be
investigated, whether it is a binding mechanism in proteins or a permeation mechanism in …
investigated, whether it is a binding mechanism in proteins or a permeation mechanism in …