Sloppiness, robustness, and evolvability in systems biology
BC Daniels, YJ Chen, JP Sethna… - Current opinion in …, 2008 - Elsevier
The functioning of many biochemical networks is often robust—remarkably stable under
changes in external conditions and internal reaction parameters. Much recent work on …
changes in external conditions and internal reaction parameters. Much recent work on …
Systems biology—an engineering perspective
A Kremling, J Saez-Rodriguez - Journal of biotechnology, 2007 - Elsevier
The interdisciplinary field of systems biology has evolved rapidly over the last years.
Different disciplines have aided the development of both its experimental and theoretical …
Different disciplines have aided the development of both its experimental and theoretical …
Bistability and oscillations in the Huang-Ferrell model of MAPK signaling
L Qiao, RB Nachbar, IG Kevrekidis… - PLoS computational …, 2007 - journals.plos.org
Physicochemical models of signaling pathways are characterized by high levels of structural
and parametric uncertainty, reflecting both incomplete knowledge about signal transduction …
and parametric uncertainty, reflecting both incomplete knowledge about signal transduction …
[图书][B] Feedback control in systems biology
C Cosentino, D Bates - 2011 - books.google.com
Like engineering systems, biological systems must also operate effectively in the presence
of internal and external uncertainty—such as genetic mutations or temperature changes, for …
of internal and external uncertainty—such as genetic mutations or temperature changes, for …
Best practices to maximize the use and reuse of quantitative and systems pharmacology models: recommendations from the United Kingdom quantitative and systems …
L Cucurull‐Sanchez, MJ Chappell… - CPT …, 2019 - Wiley Online Library
The lack of standardization in the way that quantitative and systems pharmacology (QSP)
models are developed, tested, and documented hinders their reproducibility, reusability, and …
models are developed, tested, and documented hinders their reproducibility, reusability, and …
A statistical approach reveals designs for the most robust stochastic gene oscillators
ML Woods, M Leon, R Perez-Carrasco… - ACS synthetic …, 2016 - ACS Publications
The engineering of transcriptional networks presents many challenges due to the inherent
uncertainty in the system structure, changing cellular context, and stochasticity in the …
uncertainty in the system structure, changing cellular context, and stochasticity in the …
Sensitivity analysis and robust experimental design of a signal transduction pathway system
Experimental design for cellular networks based on sensitivity analysis is studied in this
work. Both optimal and robust experimental design strategies are developed for the IκB‐NF …
work. Both optimal and robust experimental design strategies are developed for the IκB‐NF …
Structural analysis in biology: A control-theoretic approach
F Blanchini, G Giordano - Automatica, 2021 - Elsevier
Despite their complexity, biological systems are able to endure huge parameter fluctuations
and survive in the most diverse environmental conditions. Mathematical tools from graph …
and survive in the most diverse environmental conditions. Mathematical tools from graph …
Sensitivity measures for oscillating systems: Application to mammalian circadian gene network
Vital physiological behaviors exhibited daily by bacteria, plants, and animals are governed
by endogenous oscillators called circadian clocks. The most salient feature of the circadian …
by endogenous oscillators called circadian clocks. The most salient feature of the circadian …
Robustness analysis, prediction, and estimation for uncertain biochemical networks: An overview
Mathematical models of biochemical reaction networks are important tools in systems
biology and systems medicine, eg, to analyze disease causes or to make predictions for the …
biology and systems medicine, eg, to analyze disease causes or to make predictions for the …