A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
[HTML][HTML] Pollen-based climate reconstruction techniques for late Quaternary studies
Fossil pollen records are well-established indicators of past vegetation changes. The
prevalence of pollen across environmental settings including lakes, wetlands, and marine …
prevalence of pollen across environmental settings including lakes, wetlands, and marine …
Oral administration of Blautia wexlerae ameliorates obesity and type 2 diabetes via metabolic remodeling of the gut microbiota
K Hosomi, M Saito, J Park, H Murakami… - Nature …, 2022 - nature.com
The gut microbiome is an important determinant in various diseases. Here we perform a
cross-sectional study of Japanese adults and identify the Blautia genus, especially B …
cross-sectional study of Japanese adults and identify the Blautia genus, especially B …
[HTML][HTML] Fungal mycobiome drives IL-33 secretion and type 2 immunity in pancreatic cancer
A Alam, E Levanduski, P Denz, HS Villavicencio… - Cancer cell, 2022 - cell.com
TH 2 cells and innate lymphoid cells 2 (ILC2) can stimulate tumor growth by secreting pro-
tumorigenic cytokines such as interleukin-4 (IL-4), IL-5, and IL-13. However, the …
tumorigenic cytokines such as interleukin-4 (IL-4), IL-5, and IL-13. However, the …
Host selection shapes crop microbiome assembly and network complexity
Plant microbiomes are essential to host health and productivity but the ecological processes
that govern crop microbiome assembly are not fully known. Here we examined bacterial …
that govern crop microbiome assembly are not fully known. Here we examined bacterial …
Structure and function of the soil microbiome underlying N2O emissions from global wetlands
Wetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
ozone depleter released by microbes. Yet, microbial players and processes underlying the …
Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease
For decades, variability in clinical efficacy of the widely used inflammatory bowel disease
(IBD) drug 5-aminosalicylic acid (5-ASA) has been attributed, in part, to its acetylation and …
(IBD) drug 5-aminosalicylic acid (5-ASA) has been attributed, in part, to its acetylation and …
Heat stress destabilizes symbiotic nutrient cycling in corals
Recurrent mass bleaching events are pushing coral reefs worldwide to the brink of
ecological collapse. While the symptoms and consequences of this breakdown of the coral …
ecological collapse. While the symptoms and consequences of this breakdown of the coral …
Gut microbiome heritability is nearly universal but environmentally contingent
Relatives have more similar gut microbiomes than nonrelatives, but the degree to which this
similarity results from shared genotypes versus shared environments has been …
similarity results from shared genotypes versus shared environments has been …
Robust variation in infant gut microbiome assembly across a spectrum of lifestyles
Infant microbiome assembly has been intensely studied in infants from industrialized
nations, but little is known about this process in nonindustrialized populations. We deeply …
nations, but little is known about this process in nonindustrialized populations. We deeply …