A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence
D Balasubramanian, L Schneper, H Kumari… - Nucleic acids …, 2013 - academic.oup.com
Pseudomonas aeruginosa is a metabolically versatile bacterium that is found in a wide
range of biotic and abiotic habitats. It is a major human opportunistic pathogen causing …
range of biotic and abiotic habitats. It is a major human opportunistic pathogen causing …
Small RNA regulators and the bacterial response to stress
S Gottesman, CA McCullen, M Guillier… - Cold Spring Harbor …, 2006 - symposium.cshlp.org
Recent studies have uncovered dozens of regulatory small RNAs in bacteria. A large
number of these small RNAs act by pairingto their target mRNAs. The outcome of pairing …
number of these small RNAs act by pairingto their target mRNAs. The outcome of pairing …
C. elegans interprets bacterial non-coding RNAs to learn pathogenic avoidance
R Kaletsky, RS Moore, GD Vrla, LR Parsons, Z Gitai… - Nature, 2020 - nature.com
Caenorhabditis elegans must distinguish pathogens from nutritious food sources among the
many bacteria to which it is exposed in its environment. Here we show that a single …
many bacteria to which it is exposed in its environment. Here we show that a single …
Pervasive regulatory functions of mRNA structure revealed by high-resolution SHAPE probing
Summary mRNAs can fold into complex structures that regulate gene expression. Resolving
such structures de novo has remained challenging and has limited our understanding of the …
such structures de novo has remained challenging and has limited our understanding of the …
An atlas of Hfq‐bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
The small RNAs associated with the protein Hfq constitute one of the largest classes of post‐
transcriptional regulators known to date. Most previously investigated members of this class …
transcriptional regulators known to date. Most previously investigated members of this class …
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
Z Weinberg, JX Wang, J Bogue, J Yang, K Corbino… - Genome biology, 2010 - Springer
Abstract Background Structured noncoding RNAs perform many functions that are essential
for protein synthesis, RNA processing, and gene regulation. Structured RNAs can be …
for protein synthesis, RNA processing, and gene regulation. Structured RNAs can be …
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
A Sittka, S Lucchini, K Papenfort, CM Sharma… - PLoS …, 2008 - journals.plos.org
Recent advances in high-throughput pyrosequencing (HTPS) technology now allow a
thorough analysis of RNA bound to cellular proteins, and, therefore, of post-transcriptional …
thorough analysis of RNA bound to cellular proteins, and, therefore, of post-transcriptional …
Genome Diversity of Pseudomonas aeruginosa PAO1 Laboratory Strains
J Klockgether, A Munder, J Neugebauer… - Journal of …, 2010 - Am Soc Microbiol
Pseudomonas aeruginosa PAO1 is the most commonly used strain for research on this
ubiquitous and metabolically versatile opportunistic pathogen. Strain PAO1, a derivative of …
ubiquitous and metabolically versatile opportunistic pathogen. Strain PAO1, a derivative of …
The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing
A Dötsch, D Eckweiler, M Schniederjans… - PloS one, 2012 - journals.plos.org
In this study, we evaluated how gene expression differs in mature Pseudomonas aeruginosa
biofilms as opposed to planktonic cells by the use of RNA sequencing technology that gives …
biofilms as opposed to planktonic cells by the use of RNA sequencing technology that gives …
Translational control and target recognition by Escherichia coli small RNAs in vivo
JH Urban, J Vogel - Nucleic acids research, 2007 - academic.oup.com
Small non-coding RNAs (sRNAs) are an emerging class of regulators of bacterial gene
expression. Most of the regulatory Escherichia coli sRNAs known to date modulate …
expression. Most of the regulatory Escherichia coli sRNAs known to date modulate …