Introduction With available genomic data and related information, it is becoming possible to
better highlight mutations or genomic alterations associated with a particular disease or …

Small open reading frames (sORFs) have translational potential to produce peptides that
play essential roles in various biological processes. Nevertheless, many sORF-encoded …

Proteomics data processing, annotation, and analysis can often lead to major hurdles in
large‐scale high‐throughput bottom‐up proteomics experiments. Given the recent rise in …

Short open reading frame-encoded peptides (SEPs) are microproteins with less than 100
amino acids that play an essential role in the growth and development of organisms. There …

Small open reading frame encoded peptides (SEPs), also called microproteins, play a vital
role in biological processes. Plenty of their open reading frames are located within the non …

Current tools for visualization and integration of proteomics with other omics datasets are
inadequate for large-scale studies and capture only basic sequence identity information …

Proteogenomics refers to the integration of high-throughput genomics/transcriptomics with
proteomics data for genome annotation, novel gene discovery, and variant peptide detection …

Although RNA is found in the seminal fluid of diverse organisms, it is unknown whether this
RNA is functional within females. Here, we develop an experimental proteomic method …

We have carried out proteogenomic analysis of the breast cancer transcriptomic and
proteomic data, available at The Clinical Proteomic Tumor Analysis Consortium resource, to …

Motivation Proteogenomics has proven its utility by integrating genomics and proteomics.
Typical approaches use data from next-generation sequencing to infer proteins expressed …