Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation

UC Jha, H Nayyar, R Jha, M Khurshid, M Zhou… - BMC Plant …, 2020 - Springer
Background The immobile nature of plants means that they can be frequently confronted by
various biotic and abiotic stresses during their lifecycle. Among the various abiotic stresses …

Long non-coding RNAs of plants in response to abiotic stresses and their regulating roles in promoting environmental adaption

H Yang, Y Cui, Y Feng, Y Hu, L Liu, L Duan - Cells, 2023 - mdpi.com
Abiotic stresses triggered by climate change and human activity cause substantial
agricultural and environmental problems which hamper plant growth. Plants have evolved …

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

R Zhang, R Kuo, M Coulter, CPG Calixto, JC Entizne… - Genome biology, 2022 - Springer
Background Accurate and comprehensive annotation of transcript sequences is essential for
transcript quantification and differential gene and transcript expression analysis. Single …

Role of long non coding RNA in plants under abiotic and biotic stresses

GK Patra, D Gupta, GR Rout, SK Panda - Plant Physiology and …, 2023 - Elsevier
Evolutionary processes have evolved plants to cope with several different natural stresses.
Basic physiological activities of crop plants are significantly harmed by these stresses …

Regulation of alternative splicing in response to temperature variation in plants

S John, JJ Olas, B Mueller-Roeber - Journal of Experimental …, 2021 - academic.oup.com
Plants have evolved numerous molecular strategies to cope with perturbations in
environmental temperature, and to adjust growth and physiology to limit the negative effects …

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

W Guo, NA Tzioutziou, G Stephen, I Milne… - RNA biology, 2021 - Taylor & Francis
ABSTRACT RNA-sequencing (RNA-seq) analysis of gene expression and alternative
splicing should be routine and robust but is often a bottleneck for biologists because of …

Alternative splicing in plant abiotic stress responses

P Punzo, S Grillo, G Batelli - Biochemical Society Transactions, 2020 - portlandpress.com
Modifications of the cellular proteome pool upon stress allow plants to tolerate
environmental changes. Alternative splicing is the most significant mechanism responsible …

From trash to luxury: the potential role of plant lncRNA in DNA methylation during abiotic stress

MCO Urquiaga, F Thiebaut, AS Hemerly… - Frontiers in Plant …, 2021 - frontiersin.org
Remarkable progress has been made in elucidating important roles of plant non-coding
RNAs. Among these RNAs, long noncoding RNAs (lncRNAs) have gained widespread …

Comprehensive profiling of alternative splicing landscape during cold acclimation in tea plant

Y Li, X Mi, S Zhao, J Zhu, R Guo, X Xia, L Liu, S Liu… - Bmc Genomics, 2020 - Springer
Background Alternative splicing (AS) may generate multiple mRNA splicing isoforms from a
single mRNA precursor using different splicing sites, leading to enhanced diversity of …

Research progress on plant noncoding RNAs in response to low-temperature stress

C Huo, B Zhang, R Wang - Plant Signaling & Behavior, 2022 - Taylor & Francis
Low temperature (LT) is an important factor limiting plant growth and distribution. Plants
have evolved sophisticated adaptive mechanisms to cope with hypothermia. RNA silencing …