[HTML][HTML] Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP,(p) ppGpp signaling in bacteria and implications in pathogenesis

D Kalia, G Merey, S Nakayama, Y Zheng… - Chemical Society …, 2013 - pubs.rsc.org
For an organism to survive, it must be able to sense its environment and regulate
physiological processes accordingly. Understanding how bacteria integrate signals from …

[HTML][HTML] Bacterial stress responses as potential targets in overcoming antibiotic resistance

J Dawan, J Ahn - Microorganisms, 2022 - mdpi.com
Bacteria can be adapted to adverse and detrimental conditions that induce general and
specific responses to DNA damage as well as acid, heat, cold, starvation, oxidative …

pH Regulates Genes for Flagellar Motility, Catabolism, and Oxidative Stress in Escherichia coli K-12

LM Maurer, E Yohannes, SS Bondurant… - Journal of …, 2005 - Am Soc Microbiol
Gene expression profiles of Escherichia coli K-12 W3110 were compared as a function of
steady-state external pH. Cultures were grown to an optical density at 600 nm of 0.3 in …

[HTML][HTML] Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics

AH Potts, CA Vakulskas, A Pannuri, H Yakhnin… - Nature …, 2017 - nature.com
CsrA is a post-transcriptional regulatory protein that is widely distributed among bacteria.
This protein influences bacterial lifestyle decisions by binding to the 5′ untranslated and/or …

[HTML][HTML] Conserved and Variable Functions of the σE Stress Response in Related Genomes

VA Rhodius, WC Suh, G Nonaka, J West… - PLoS biology, 2006 - journals.plos.org
Bacteria often cope with environmental stress by inducing alternative sigma (σ) factors,
which direct RNA polymerase to specific promoters, thereby inducing a set of genes called a …

[HTML][HTML] OMP peptide signals initiate the envelope-stress response by activating DegS protease via relief of inhibition mediated by its PDZ domain

NP Walsh, BM Alba, B Bose, CA Gross, RT Sauer - Cell, 2003 - cell.com
Transmembrane signaling between intracellular compartments is often controlled by
regulated proteolysis. Escherichia coli respond to misfolded or unfolded outer-membrane …

Identity and function of a large gene network underlying mutagenic repair of DNA breaks

AAM Al Mamun, MJ Lombardo, C Shee, AM Lisewski… - Science, 2012 - science.org
Mechanisms of DNA repair and mutagenesis are defined on the basis of relatively few
proteins acting on DNA, yet the identities and functions of all proteins required are unknown …

The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistance

ME Laubacher, SE Ades - Journal of bacteriology, 2008 - Am Soc Microbiol
Gram-negative bacteria possess stress responses to maintain the integrity of the cell
envelope. Stress sensors monitor outer membrane permeability, envelope protein folding …

Regulation of the Escherichia coliσE‐dependent envelope stress response

BM Alba, CA Gross - Molecular microbiology, 2004 - Wiley Online Library
The Escherichia coliσE‐dependent stress response pathway controls the expression of
genes encoding periplasmic folding catalysts, proteases, biosynthesis enzymes for lipid A (a …

Genome degeneration and adaptation in a nascent stage of symbiosis

KF Oakeson, R Gil, AL Clayton, DM Dunn… - Genome biology and …, 2014 - academic.oup.com
Symbiotic associations between animals and microbes are ubiquitous in nature, with an
estimated 15% of all insect species harboring intracellular bacterial symbionts. Most …