Cryptic species as a window into the paradigm shift of the species concept
C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …
delimitation of species affects many research fields. Many biologists now are embracing a …
Practical considerations for plant phylogenomics
MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
ASAP: assemble species by automatic partitioning
N Puillandre, S Brouillet, G Achaz - Molecular Ecology …, 2021 - Wiley Online Library
Abstract Here, we describe Assemble Species by Automatic Partitioning (ASAP), a new
method to build species partitions from single locus sequence alignments (ie, barcode data …
method to build species partitions from single locus sequence alignments (ie, barcode data …
Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments
INTRODUCTION The study of hominin history has progressed through both archaeological
and genetic insights. Although DNA sequencing from hominin skeletal remains allows the …
and genetic insights. Although DNA sequencing from hominin skeletal remains allows the …
Comparison of methods for molecular species delimitation across a range of speciation scenarios
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …
various operational criteria. There has been growing use of molecular approaches for …
Unguided species delimitation using DNA sequence data from multiple loci
A method was developed for simultaneous Bayesian inference of species delimitation and
species phylogeny using the multispecies coalescent model. The method eliminates the …
species phylogeny using the multispecies coalescent model. The method eliminates the …
A tenuis relationship: traditional taxonomy obscures systematics and biogeography of the 'Acropora tenuis' (Scleractinia: Acroporidae) species complex
Molecular phylogenetics has fundamentally altered our understanding of the taxonomy,
systematics and biogeography of corals. Recently developed phylogenomic techniques …
systematics and biogeography of corals. Recently developed phylogenomic techniques …
From integrative taxonomy to species description: one step beyond
E Pante, C Schoelinck, N Puillandre - Systematic Biology, 2015 - academic.oup.com
MATERIALS AND METHODS We performed a literature survey using the Web of Science
research tool, limited to the scientific articles published between 2006 and 2013, and using …
research tool, limited to the scientific articles published between 2006 and 2013, and using …
Species delimitation in herpetology
DM Hillis - Journal of Herpetology, 2019 - meridian.allenpress.com
The discovery and delimitation of species has changed dramatically over time. Species
delimitation practices became more thorough and formal in the 1900s with the introduction …
delimitation practices became more thorough and formal in the 1900s with the introduction …
Guidelines for DNA taxonomy, with a focus on the meiofauna
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …