DNA replication timing

N Rhind, DM Gilbert - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Patterns of replication within eukaryotic genomes correlate with gene expression, chromatin
structure, and genome evolution. Recent advances in genome-scale mapping of replication …

Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective

D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …

High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells

PA Zhao, T Sasaki, DM Gilbert - Genome biology, 2020 - Springer
Background DNA replication in mammalian cells occurs in a defined temporal order during
S phase, known as the replication timing (RT) programme. Replication timing is …

Genome-wide mapping of individual replication fork velocities using nanopore sequencing

B Theulot, L Lacroix, JM Arbona, GA Millot… - Nature …, 2022 - nature.com
Little is known about replication fork velocity variations along eukaryotic genomes, since
reference techniques to determine fork speed either provide no sequence information or …

Emergence of replication timing during early mammalian development

T Nakatani, T Schauer, L Altamirano-Pacheco… - Nature, 2024 - nature.com
DNA replication enables genetic inheritance across the kingdoms of life. Replication occurs
with a defined temporal order known as the replication timing (RT) programme, leading to …

Quantitative, genome-wide analysis of eukaryotic replication initiation and termination

SR McGuffee, DJ Smith, I Whitehouse - Molecular cell, 2013 - cell.com
Many fundamental aspects of DNA replication, such as the exact locations where DNA
synthesis is initiated and terminated, how frequently origins are used, and how fork …

OriDB, the DNA replication origin database updated and extended

CC Siow, SR Nieduszynska, CA Müller… - Nucleic acids …, 2012 - academic.oup.com
Abstract OriDB (http://www. oridb. org/) is a database containing collated genome-wide
mapping studies of confirmed and predicted replication origin sites. The original database …

[HTML][HTML] The contribution of dormant origins to genome stability: from cell biology to human genetics

RC Alver, GS Chadha, JJ Blow - DNA repair, 2014 - Elsevier
The ability of a eukaryotic cell to precisely and accurately replicate its DNA is crucial to
maintain genome stability. Here we describe our current understanding of the process by …

Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome

G Guilbaud, A Rappailles, A Baker… - PLoS computational …, 2011 - journals.plos.org
Genome-wide replication timing studies have suggested that mammalian chromosomes
consist of megabase-scale domains of coordinated origin firing separated by large …

Peaks cloaked in the mist: the landscape of mammalian replication origins

O Hyrien - Journal of Cell Biology, 2015 - rupress.org
Replication of mammalian genomes starts at sites termed replication origins, which
historically have been difficult to locate as a result of large genome sizes, limited power of …