DNA replication timing
N Rhind, DM Gilbert - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Patterns of replication within eukaryotic genomes correlate with gene expression, chromatin
structure, and genome evolution. Recent advances in genome-scale mapping of replication …
structure, and genome evolution. Recent advances in genome-scale mapping of replication …
Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective
D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …
High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells
PA Zhao, T Sasaki, DM Gilbert - Genome biology, 2020 - Springer
Background DNA replication in mammalian cells occurs in a defined temporal order during
S phase, known as the replication timing (RT) programme. Replication timing is …
S phase, known as the replication timing (RT) programme. Replication timing is …
Genome-wide mapping of individual replication fork velocities using nanopore sequencing
Little is known about replication fork velocity variations along eukaryotic genomes, since
reference techniques to determine fork speed either provide no sequence information or …
reference techniques to determine fork speed either provide no sequence information or …
Emergence of replication timing during early mammalian development
T Nakatani, T Schauer, L Altamirano-Pacheco… - Nature, 2024 - nature.com
DNA replication enables genetic inheritance across the kingdoms of life. Replication occurs
with a defined temporal order known as the replication timing (RT) programme, leading to …
with a defined temporal order known as the replication timing (RT) programme, leading to …
Quantitative, genome-wide analysis of eukaryotic replication initiation and termination
SR McGuffee, DJ Smith, I Whitehouse - Molecular cell, 2013 - cell.com
Many fundamental aspects of DNA replication, such as the exact locations where DNA
synthesis is initiated and terminated, how frequently origins are used, and how fork …
synthesis is initiated and terminated, how frequently origins are used, and how fork …
OriDB, the DNA replication origin database updated and extended
CC Siow, SR Nieduszynska, CA Müller… - Nucleic acids …, 2012 - academic.oup.com
Abstract OriDB (http://www. oridb. org/) is a database containing collated genome-wide
mapping studies of confirmed and predicted replication origin sites. The original database …
mapping studies of confirmed and predicted replication origin sites. The original database …
[HTML][HTML] The contribution of dormant origins to genome stability: from cell biology to human genetics
RC Alver, GS Chadha, JJ Blow - DNA repair, 2014 - Elsevier
The ability of a eukaryotic cell to precisely and accurately replicate its DNA is crucial to
maintain genome stability. Here we describe our current understanding of the process by …
maintain genome stability. Here we describe our current understanding of the process by …
Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome
G Guilbaud, A Rappailles, A Baker… - PLoS computational …, 2011 - journals.plos.org
Genome-wide replication timing studies have suggested that mammalian chromosomes
consist of megabase-scale domains of coordinated origin firing separated by large …
consist of megabase-scale domains of coordinated origin firing separated by large …
Peaks cloaked in the mist: the landscape of mammalian replication origins
O Hyrien - Journal of Cell Biology, 2015 - rupress.org
Replication of mammalian genomes starts at sites termed replication origins, which
historically have been difficult to locate as a result of large genome sizes, limited power of …
historically have been difficult to locate as a result of large genome sizes, limited power of …