Near-optimal quantum algorithms for bounded edit distance and lempel-ziv factorization

D Gibney, C Jin, T Kociumaka, SV Thankachan - Proceedings of the 2024 …, 2024 - SIAM
Measuring sequence similarity and compressing texts are among the most fundamental
tasks in string algorithms. In this work, we develop near-optimal quantum algorithms for the …

Approximating edit distance in the fully dynamic model

T Kociumaka, A Mukherjee… - 2023 IEEE 64th Annual …, 2023 - ieeexplore.ieee.org
The edit distance is a fundamental measure of sequence similarity, defined as the minimum
number of character insertions, deletions, and substitutions needed to transform one string …

Optimal algorithms for bounded weighted edit distance

A Cassis, T Kociumaka… - 2023 IEEE 64th Annual …, 2023 - ieeexplore.ieee.org
The edit distance (also known as Levenshtein distance) of two strings is the minimum
number of insertions, deletions, and substitutions of characters needed to transform one …

Gap edit distance via non-adaptive queries: Simple and optimal

E Goldenberg, T Kociumaka… - 2022 IEEE 63rd …, 2022 - ieeexplore.ieee.org
We study the problem of approximating edit distance in sublinear time. This is formalized as
the (k,\k^c)-GAP EDIT DISTANCE problem, where the input is a pair of strings X,Y and …

On Differentially Private String Distances

JYC Hu, E Liu, H Liu, Z Song, L Zhang - arXiv preprint arXiv:2411.05750, 2024 - arxiv.org
Given a database of bit strings $ A_1,\ldots, A_m\in\{0, 1\}^ n $, a fundamental data structure
task is to estimate the distances between a given query $ B\in\{0, 1\}^ n $ with all the strings …

Bounded Edit Distance: Optimal Static and Dynamic Algorithms for Small Integer Weights

E Gorbachev, T Kociumaka - arXiv preprint arXiv:2404.06401, 2024 - arxiv.org
The edit distance of two strings is the minimum number of insertions, deletions, and
substitutions needed to transform one string into the other. The textbook algorithm …

Algorithms for sparse convolution and sublinear edit distance

N Fischer - 2023 - publikationen.sulb.uni-saarland.de
In this PhD thesis on fine-grained algorithm design and complexity, we investigate output-
sensitive and sublinear-time algorithms for two important problems.(1) Sparse Convolution …

An algorithmic bridge between Hamming and Levenshtein distances

E Goldenberg, T Kociumaka, R Krauthgamer… - arXiv preprint arXiv …, 2022 - arxiv.org
The edit distance between strings classically assigns unit cost to every character insertion,
deletion, and substitution, whereas the Hamming distance only allows substitutions. In many …

Faster Sublinear-Time Edit Distance

K Bringmann, A Cassis, N Fischer, T Kociumaka - Proceedings of the 2024 …, 2024 - SIAM
We study the fundamental problem of approximating the edit distance of two strings. After an
extensive line of research led to the development of a constant-factor approximation …