Crop phenomics and high-throughput phenotyping: past decades, current challenges, and future perspectives

W Yang, H Feng, X Zhang, J Zhang, JH Doonan… - Molecular plant, 2020 - cell.com
Since whole-genome sequencing of many crops has been achieved, crop functional
genomics studies have stepped into the big-data and high-throughput era. However …

Bulk segregation analysis in the NGS era: a review of its teenage years

Z Li, Y Xu - The Plant Journal, 2022 - Wiley Online Library
Bulk segregation analysis (BSA) utilizes a strategy of pooling individuals with extreme
phenotypes to conduct economical and rapidly linked marker screening or quantitative trait …

Natural variation in crops: realized understanding, continuing promise

Y Liang, HJ Liu, J Yan, F Tian - Annual review of plant biology, 2021 - annualreviews.org
Crops feed the world's population and shape human civilization. The improvement of crop
productivity has been ongoing for almost 10,000 years and has evolved from an experience …

Fine mapping and gene cloning in the post-NGS era: advances and prospects

D Jaganathan, A Bohra, M Thudi… - Theoretical and Applied …, 2020 - Springer
Improvement in traits of agronomic importance is the top breeding priority of crop
improvement programs. Majority of these agronomic traits show complex quantitative …

Genomic interventions for sustainable agriculture

A Bohra, U Chand Jha, ID Godwin… - Plant Biotechnology …, 2020 - Wiley Online Library
Agricultural production faces a Herculean challenge to feed the increasing global
population. Food production systems need to deliver more with finite land and water …

Identification of a Major QTL and Candidate Gene Analysis of Salt Tolerance at the Bud Burst Stage in Rice (Oryza sativa L.) Using QTL-Seq and RNA-Seq

L Lei, H Zheng, Y Bi, L Yang, H Liu, J Wang, J Sun… - Rice, 2020 - Springer
Background Salt stress is one of the main abiotic stresses that limits rice production
worldwide. Rice salt tolerance at the bud burst stage directly affects the seedling survival …

The past, present, and future of maize improvement: domestication, genomics, and functional genomic routes toward crop enhancement

J Liu, AR Fernie, J Yan - Plant Communications, 2020 - cell.com
After being domesticated from teosinte, cultivated maize (Zea mays ssp. mays) spread
worldwide and now is one of the most important staple crops. Due to its tremendous …

Breeding maize of ideal plant architecture for high‐density planting tolerance through modulating shade avoidance response and beyond

F Jafari, B Wang, H Wang, J Zou - Journal of Integrative Plant …, 2024 - Wiley Online Library
Maize is a major staple crop widely used as food, animal feed, and raw materials in
industrial production. High‐density planting is a major factor contributing to the continuous …

Shaping polyploid wheat for success: Origins, domestication, and the genetic improvement of agronomic traits

J Liu, Y Yao, M Xin, H Peng, Z Ni… - Journal of Integrative …, 2022 - Wiley Online Library
Bread wheat (Triticum aestivum L., AABBDD, 2n= 6x= 42), which accounts for most of the
cultivated wheat crop worldwide, is a typical allohexaploid with a genome derived from three …

The identification of grain size genes by RapMap reveals directional selection during rice domestication

J Zhang, D Zhang, Y Fan, C Li, P Xu, W Li… - Nature …, 2021 - nature.com
Cloning quantitative trait locus (QTL) is time consuming and laborious, which hinders the
understanding of natural variation and genetic diversity. Here, we introduce RapMap, a …