Implicit solvation methods for catalysis at electrified interfaces

S Ringe, NG Hormann, H Oberhofer… - Chemical Reviews, 2021 - ACS Publications
Implicit solvation is an effective, highly coarse-grained approach in atomic-scale simulations
to account for a surrounding liquid electrolyte on the level of a continuous polarizable …

Water in nanopores and biological channels: a molecular simulation perspective

CI Lynch, S Rao, MSP Sansom - Chemical reviews, 2020 - ACS Publications
This Review explores the dynamic behavior of water within nanopores and biological
channels in lipid bilayer membranes. We focus on molecular simulation studies, alongside …

Forces are not enough: Benchmark and critical evaluation for machine learning force fields with molecular simulations

X Fu, Z Wu, W Wang, T Xie, S Keten… - arXiv preprint arXiv …, 2022 - arxiv.org
Molecular dynamics (MD) simulation techniques are widely used for various natural science
applications. Increasingly, machine learning (ML) force field (FF) models begin to replace ab …

The bending mode of water: A powerful probe for hydrogen bond structure of aqueous systems

T Seki, KY Chiang, CC Yu, X Yu, M Okuno… - The journal of …, 2020 - ACS Publications
Insights into the microscopic structure and dynamics of the water's hydrogen-bonded
network are crucial to understand the role of water in biology, atmospheric and geochemical …

Systematic comparison of the structural and dynamic properties of commonly used water models for molecular dynamics simulations

SP Kadaoluwa Pathirannahalage… - Journal of Chemical …, 2021 - ACS Publications
Water is a unique solvent that is ubiquitous in biology and present in a variety of solutions,
mixtures, and materials settings. It therefore forms the basis for all molecular dynamics …

Building water models: a different approach

S Izadi, R Anandakrishnan… - The journal of physical …, 2014 - ACS Publications
Simplified classical water models are currently an indispensable component in practical
atomistic simulations. Yet, despite several decades of intense research, these models are …

How van der Waals interactions determine the unique properties of water

T Morawietz, A Singraber… - Proceedings of the …, 2016 - National Acad Sciences
Whereas the interactions between water molecules are dominated by strongly directional
hydrogen bonds (HBs), it was recently proposed that relatively weak, isotropic van der …

Modeling molecular interactions in water: From pairwise to many-body potential energy functions

GA Cisneros, KT Wikfeldt, L Ojamäe, J Lu… - Chemical …, 2016 - ACS Publications
Almost 50 years have passed from the first computer simulations of water, and a large
number of molecular models have been proposed since then to elucidate the unique …

The structure of interfacial water on gold electrodes studied by x-ray absorption spectroscopy

JJ Velasco-Velez, CH Wu, TA Pascal, LF Wan, J Guo… - Science, 2014 - science.org
The molecular structure of the electrical double layer determines the chemistry in all
electrochemical processes. Using x-ray absorption spectroscopy (XAS), we probed the …

Macroscale superlubricity enabled by graphene nanoscroll formation

D Berman, SA Deshmukh, SKRS Sankaranarayanan… - Science, 2015 - science.org
Friction and wear remain as the primary modes of mechanical energy dissipation in moving
mechanical assemblies; thus, it is desirable to minimize friction in a number of applications …