Spatial pharmacology using mass spectrometry imaging

P Rajbhandari, TV Neelakantan, N Hosny… - Trends in …, 2024 - cell.com
The emerging and powerful field of spatial pharmacology can map the spatial distribution of
drugs and their metabolites, as well as their effects on endogenous biomolecules including …

Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases

P Kiessling, C Kuppe - Genome Medicine, 2024 - Springer
Spatial multi-omic studies have emerged as a promising approach to comprehensively
analyze cells in tissues, enabling the joint analysis of multiple data modalities like …

STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping

K Clifton, M Anant, G Aihara, L Atta, OK Aimiuwu… - Nature …, 2023 - nature.com
Spatial transcriptomics (ST) technologies enable high throughput gene expression
characterization within thin tissue sections. However, comparing spatial observations across …

CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data

CZI Single-Cell Biology, S Abdulla, B Aevermann… - BioRxiv, 2023 - biorxiv.org
Hundreds of millions of single cells have been analyzed to date using high throughput
transcriptomic methods, thanks to technological advances driving the increasingly rapid …

Navigating the kidney organoid: insights into assessment and enhancement of nephron function

N Tabibzadeh, LM Satlin, S Jain… - American Journal of …, 2023 - journals.physiology.org
Kidney organoids are three-dimensional structures generated from pluripotent stem cells
(PSCs) that are capable of recapitulating the major structures of mammalian kidneys. As this …

T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response

JW Hickey, M Haist, N Horowitz, C Caraccio, Y Tan… - Cell Reports, 2023 - cell.com
Antigen-specific T cells traffic to, are influenced by, and create unique cellular
microenvironments. Here we characterize these microenvironments over time with …

Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients

AJ Radtke, E Postovalova, A Varlamova, A Bagaev… - Cancer cell, 2024 - cell.com
Follicular lymphoma (FL) is a generally incurable malignancy that evolves from
developmentally blocked germinal center (GC) B cells. To promote survival and immune …

Spatial transcriptomics in health and disease

S Jain, MT Eadon - Nature Reviews Nephrology, 2024 - nature.com
The ability to localize hundreds of macromolecules to discrete locations, structures and cell
types in a tissue is a powerful approach to understand the cellular and spatial organization …

The evolving definition of plant cell type

S Amini, JJ Doyle, M Libault - Frontiers in Plant Science, 2023 - frontiersin.org
In 1665 Robert Hooke, looking at cork through his microscope, discovered that plants are
composed of elementary structures he named “cells”. Variation in the expression of a single …

K-Means Featurizer: A booster for intricate datasets

KL Kouadio, J Liu, R Liu, Y Wang, W Liu - Earth Science Informatics, 2024 - Springer
Abstract Machine Learning (ML) has become pivotal across various fields, offering
innovative solutions to complex data challenges. Professionals typically seek models that …