Spatial pharmacology using mass spectrometry imaging
P Rajbhandari, TV Neelakantan, N Hosny… - Trends in …, 2024 - cell.com
The emerging and powerful field of spatial pharmacology can map the spatial distribution of
drugs and their metabolites, as well as their effects on endogenous biomolecules including …
drugs and their metabolites, as well as their effects on endogenous biomolecules including …
Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases
P Kiessling, C Kuppe - Genome Medicine, 2024 - Springer
Spatial multi-omic studies have emerged as a promising approach to comprehensively
analyze cells in tissues, enabling the joint analysis of multiple data modalities like …
analyze cells in tissues, enabling the joint analysis of multiple data modalities like …
STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping
Spatial transcriptomics (ST) technologies enable high throughput gene expression
characterization within thin tissue sections. However, comparing spatial observations across …
characterization within thin tissue sections. However, comparing spatial observations across …
CZ CELLxGENE Discover: A single-cell data platform for scalable exploration, analysis and modeling of aggregated data
CZI Single-Cell Biology, S Abdulla, B Aevermann… - BioRxiv, 2023 - biorxiv.org
Hundreds of millions of single cells have been analyzed to date using high throughput
transcriptomic methods, thanks to technological advances driving the increasingly rapid …
transcriptomic methods, thanks to technological advances driving the increasingly rapid …
Navigating the kidney organoid: insights into assessment and enhancement of nephron function
N Tabibzadeh, LM Satlin, S Jain… - American Journal of …, 2023 - journals.physiology.org
Kidney organoids are three-dimensional structures generated from pluripotent stem cells
(PSCs) that are capable of recapitulating the major structures of mammalian kidneys. As this …
(PSCs) that are capable of recapitulating the major structures of mammalian kidneys. As this …
T cell-mediated curation and restructuring of tumor tissue coordinates an effective immune response
Antigen-specific T cells traffic to, are influenced by, and create unique cellular
microenvironments. Here we characterize these microenvironments over time with …
microenvironments. Here we characterize these microenvironments over time with …
Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients
Follicular lymphoma (FL) is a generally incurable malignancy that evolves from
developmentally blocked germinal center (GC) B cells. To promote survival and immune …
developmentally blocked germinal center (GC) B cells. To promote survival and immune …
Spatial transcriptomics in health and disease
S Jain, MT Eadon - Nature Reviews Nephrology, 2024 - nature.com
The ability to localize hundreds of macromolecules to discrete locations, structures and cell
types in a tissue is a powerful approach to understand the cellular and spatial organization …
types in a tissue is a powerful approach to understand the cellular and spatial organization …
The evolving definition of plant cell type
In 1665 Robert Hooke, looking at cork through his microscope, discovered that plants are
composed of elementary structures he named “cells”. Variation in the expression of a single …
composed of elementary structures he named “cells”. Variation in the expression of a single …
K-Means Featurizer: A booster for intricate datasets
KL Kouadio, J Liu, R Liu, Y Wang, W Liu - Earth Science Informatics, 2024 - Springer
Abstract Machine Learning (ML) has become pivotal across various fields, offering
innovative solutions to complex data challenges. Professionals typically seek models that …
innovative solutions to complex data challenges. Professionals typically seek models that …