Gene prediction by the noise-assisted MEMD and wavelet transform for identifying the protein coding regions

Q Zheng, T Chen, W Zhou, L Xie, H Su - Biocybernetics and Biomedical …, 2021 - Elsevier
The analysis of protein coding regions of DNA sequences is one of the most fundamental
applications in bioinformatics. A number of model-independent approaches have been …

Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data

IJ Tripodi, M Chowdhury, M Gruca, RD Dowell - Plos one, 2020 - journals.plos.org
The assay for transposase-accessible chromatin followed by sequencing (ATAC-seq) is an
inexpensive protocol for measuring open chromatin regions. ATAC-seq is also relatively …