Bioisosteres of the phenyl ring: recent strategic applications in lead optimization and drug design
MAM Subbaiah, NA Meanwell - Journal of Medicinal Chemistry, 2021 - ACS Publications
The benzene moiety is the most prevalent ring system in marketed drugs, underscoring its
historic popularity in drug design either as a pharmacophore or as a scaffold that projects …
historic popularity in drug design either as a pharmacophore or as a scaffold that projects …
Latest developments in molecular docking: 2010–2011 in review
E Yuriev, PA Ramsland - Journal of Molecular Recognition, 2013 - Wiley Online Library
The aim of docking is to accurately predict the structure of a ligand within the constraints of a
receptor binding site and to correctly estimate the strength of binding. We discuss, in detail …
receptor binding site and to correctly estimate the strength of binding. We discuss, in detail …
CMM—An enhanced platform for interactive validation of metal binding sites
M Gucwa, J Lenkiewicz, H Zheng… - Protein …, 2023 - Wiley Online Library
Metal ions bound to macromolecules play an integral role in many cellular processes. They
can directly participate in catalytic mechanisms or be essential for the structural integrity of …
can directly participate in catalytic mechanisms or be essential for the structural integrity of …
MMGBSA as a tool to understand the binding affinities of filamin–peptide interactions
M Ylilauri, OT Pentikäinen - Journal of chemical information and …, 2013 - ACS Publications
Filamins (FLN) are large dimeric proteins that cross-link actin and work as important
scaffolds in human cells. FLNs consist of an N-terminal actin-binding domain followed by 24 …
scaffolds in human cells. FLNs consist of an N-terminal actin-binding domain followed by 24 …
Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server
Metals have vital roles in both the mechanism and architecture of biological
macromolecules. Yet structures of metal-containing macromolecules in which metals are …
macromolecules. Yet structures of metal-containing macromolecules in which metals are …
Protein crystallography for aspiring crystallographers or how to avoid pitfalls and traps in macromolecular structure determination
A Wlodawer, W Minor, Z Dauter… - The FEBS journal, 2013 - Wiley Online Library
The number of macromolecular structures deposited in the Protein Data Bank now
approaches 100 000, with the vast majority of them determined by crystallographic methods …
approaches 100 000, with the vast majority of them determined by crystallographic methods …
A public database of macromolecular diffraction experiments
M Grabowski, KM Langner, M Cymborowski… - Biological …, 2016 - journals.iucr.org
The low reproducibility of published experimental results in many scientific disciplines has
recently garnered negative attention in scientific journals and the general media. Public …
recently garnered negative attention in scientific journals and the general media. Public …
X-ray crystallography over the past decade for novel drug discovery–where are we heading next?
H Zheng, KB Handing, MD Zimmerman… - Expert opinion on …, 2015 - Taylor & Francis
Introduction: Macromolecular X-ray crystallography has been the primary methodology for
determining the three-dimensional structures of proteins, nucleic acids and viruses …
determining the three-dimensional structures of proteins, nucleic acids and viruses …
Integrated approach to structure-based enzymatic drug design: molecular modeling, spectroscopy, and experimental bioactivity
Analysis of the literature involving computational modeling of diseases and drug design with
the aid of experimental spectroscopic techniques reveals that this specific combination of …
the aid of experimental spectroscopic techniques reveals that this specific combination of …
Metformin impairs glucose consumption and survival in Calu-1 cells by direct inhibition of hexokinase-II
The anti-hyperglycaemic drug metformin has important anticancer properties as shown by
the direct inhibition of cancer cells proliferation. Tumor cells avidly use glucose as a source …
the direct inhibition of cancer cells proliferation. Tumor cells avidly use glucose as a source …