Unique features of long non-coding RNA biogenesis and function
Long non-coding RNAs (lncRNAs) are a diverse class of RNAs that engage in numerous
biological processes across every branch of life. Although initially discovered as mRNA-like …
biological processes across every branch of life. Although initially discovered as mRNA-like …
The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain
KM Harlen, LS Churchman - Nature reviews Molecular cell biology, 2017 - nature.com
The carboxy-terminal domain (CTD) extends from the largest subunit of RNA polymerase II
(Pol II) as a long, repetitive and largely unstructured polypeptide chain. Throughout the …
(Pol II) as a long, repetitive and largely unstructured polypeptide chain. Throughout the …
[HTML][HTML] Non-coding RNA: what is functional and what is junk?
AF Palazzo, ES Lee - Frontiers in genetics, 2015 - frontiersin.org
The genomes of large multicellular eukaryotes are mostly comprised of non-protein coding
DNA. Although there has been much agreement that a small fraction of these genomes has …
DNA. Although there has been much agreement that a small fraction of these genomes has …
Transcription termination and the control of the transcriptome: why, where and how to stop
O Porrua, D Libri - Nature reviews Molecular cell biology, 2015 - nature.com
Transcription termination occurs when the polymerase is released after a transcription event,
thus delimitating transcription units; however, the functional importance of termination …
thus delimitating transcription units; however, the functional importance of termination …
Nucleosome positioning and gene regulation: advances through genomics
C Jiang, BF Pugh - Nature Reviews Genetics, 2009 - nature.com
Knowing the precise locations of nucleosomes in a genome is key to understanding how
genes are regulated. Recent'next generation'ChIP–chip and ChIP–Seq technologies have …
genes are regulated. Recent'next generation'ChIP–chip and ChIP–Seq technologies have …
The case for junk DNA
AF Palazzo, TR Gregory - PLoS genetics, 2014 - journals.plos.org
With the advent of deep sequencing technologies and the ability to analyze whole genome
sequences and transcriptomes, there has been a growing interest in exploring putative …
sequences and transcriptomes, there has been a growing interest in exploring putative …
RNA Degradation in Saccharomyces cerevisae
R Parker - Genetics, 2012 - academic.oup.com
All RNA species in yeast cells are subject to turnover. Work over the past 20 years has
defined degradation mechanisms for messenger RNAs, transfer RNAs, ribosomal RNAs …
defined degradation mechanisms for messenger RNAs, transfer RNAs, ribosomal RNAs …
[PDF][PDF] Identification of a nuclear exosome decay pathway for processed transcripts
N Meola, M Domanski, E Karadoulama, Y Chen… - Molecular cell, 2016 - cell.com
The RNA exosome is fundamental for the degradation of RNA in eukaryotic nuclei. Substrate
targeting is facilitated by its co-factor Mtr4p/hMTR4, which links to RNA-binding protein …
targeting is facilitated by its co-factor Mtr4p/hMTR4, which links to RNA-binding protein …
The Paf1 complex: a keystone of nuclear regulation operating at the interface of transcription and chromatin
The regulation of transcription by RNA polymerase II is closely intertwined with the
regulation of chromatin structure. A host of proteins required for the disassembly …
regulation of chromatin structure. A host of proteins required for the disassembly …
Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs
Recent advances have fuelled rapid growth in our appreciation of the tremendous number,
diversity and biological importance of non-coding (nc) RNAs. Because ncRNAs typically …
diversity and biological importance of non-coding (nc) RNAs. Because ncRNAs typically …