Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation

K Van Roey, B Uyar, RJ Weatheritt, H Dinkel… - Chemical …, 2014 - ACS Publications
The eukaryotic cell is a bustling collection of macromolecules acting cooperatively to
mediate the functions required for cell viability. Specific, context-dependent and tightly …

Protein–protein interactions in human disease

DP Ryan, JM Matthews - Current opinion in structural biology, 2005 - Elsevier
Many human diseases are the result of abnormal protein–protein interactions involving
endogenous proteins, proteins from pathogens or both. The inhibition of these aberrant …

The structural basis of peptide-protein binding strategies

N London, D Movshovitz-Attias, O Schueler-Furman - Structure, 2010 - cell.com
Peptide-protein interactions are very prevalent, mediating key processes such as signal
transduction and protein trafficking. How can peptides overcome the entropic cost involved …

Targeting protein–protein interactions for therapeutic intervention: a challenge for the future

G Zinzalla, DE Thurston - Future medicinal chemistry, 2009 - Taylor & Francis
Background: Over the last two decades, an increasing research effort in academia and
industry has focused on the modulation (both inhibition and stabilization) of protein–protein …

Small molecule inhibition of ligand-stimulated RAGE-DIAPH1 signal transduction

MB Manigrasso, J Pan, V Rai, J Zhang, S Reverdatto… - Scientific reports, 2016 - nature.com
The receptor for advanced glycation endproducts (RAGE) binds diverse ligands linked to
chronic inflammation and disease. NMR spectroscopy and x-ray crystallization studies of the …

SARS-CoV-2 nucleocapsid and Nsp3 binding: an in silico study

MT Khan, MT Zeb, H Ahsan, A Ahmed, A Ali… - Archives of …, 2021 - Springer
Severe acute respiratory syndrome virus 2 (SARS-CoV-2) belongs to the single-stranded
positive-sense RNA family. The virus contains a large genome that encodes four structural …

Targeting protein–protein interactions by rational design: mimicry of protein surfaces

S Fletcher, AD Hamilton - Journal of the Royal Society …, 2006 - royalsocietypublishing.org
Protein–protein interactions play key roles in a range of biological processes, and are
therefore important targets for the design of novel therapeutics. Unlike in the design of …

Protein surface recognition and proteomimetics: mimics of protein surface structure and function

S Fletcher, AD Hamilton - Current opinion in chemical biology, 2005 - Elsevier
Due to their key roles in a number of biological processes, protein–protein interactions are
attractive and important targets, typically involving areas greater than 6nm2. The disruption …

The design, structures and therapeutic potential of protein epitope mimetics

JA Robinson, S DeMarco, F Gombert, K Moehle… - Drug discovery today, 2008 - Elsevier
Using a biologically relevant peptide or protein structure as a starting point for lead
identification represents one of the most powerful approaches in modern drug discovery …

Insights into protein–protein interfaces using a Bayesian network prediction method

JR Bradford, CJ Needham, AJ Bulpitt… - Journal of molecular …, 2006 - Elsevier
Identifying the interface between two interacting proteins provides important clues to the
function of a protein, and is becoming increasing relevant to drug discovery. Here, surface …