[HTML][HTML] Long non-coding RNAs and transposable elements: A functional relationship

V Fort, G Khelifi, SMI Hussein - … et Biophysica Acta (BBA)-Molecular Cell …, 2021 - Elsevier
Long non-coding RNAs (lncRNAs) have become increasingly important in the past decade.
They are known to regulate gene expression and to interact with chromatin, proteins and …

Long non-coding RNA NR2F1-AS1 induces breast cancer lung metastatic dormancy by regulating NR2F1 and ΔNp63

Y Liu, P Zhang, Q Wu, H Fang, Y Wang, Y Xiao… - Nature …, 2021 - nature.com
Disseminated tumor cells often fall into a long term of dormant stage, characterized by
decreased proliferation but sustained survival, in distant organs before awakening for …

The lncRNA toolkit: databases and in silico tools for lncRNA analysis

HR Pinkney, BM Wright, SD Diermeier - Non-coding RNA, 2020 - mdpi.com
Long non-coding RNAs (lncRNAs) are a rapidly expanding field of research, with many new
transcripts identified each year. However, only a small subset of lncRNAs has been …

Human senataxin is a bona fide R-loop resolving enzyme and transcription termination factor

Z Hasanova, V Klapstova, O Porrua, R Stefl… - Nucleic Acids …, 2023 - academic.oup.com
Prolonged pausing of the transcription machinery may lead to the formation of three-
stranded nucleic acid structures, called R-loops, typically resulting from the annealing of the …

[HTML][HTML] Global RNA interactome of Salmonella discovers a 5′ UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity

G Matera, Y Altuvia, M Gerovac, Y El Mouali, H Margalit… - Molecular cell, 2022 - cell.com
The envelope of Gram-negative bacteria is a vital barrier that must balance protection and
nutrient uptake. Small RNAs are crucial regulators of the envelope composition and function …

Telomerase RNA in Hymenoptera (Insecta) switched to plant/ciliate-like biogenesis

P Fajkus, M Adámik, ADL Nelson, AM Kilar… - Nucleic Acids …, 2023 - academic.oup.com
In contrast to the catalytic subunit of telomerase, its RNA subunit (TR) is highly divergent in
size, sequence and biogenesis pathways across eukaryotes. Current views on TR evolution …

Implications of SARS-CoV-2 mutations for genomic RNA structure and host microRNA targeting

A Hosseini Rad SM, AD McLellan - International journal of molecular …, 2020 - mdpi.com
The SARS-CoV-2 virus is a recently-emerged zoonotic pathogen already well adapted to
transmission and replication in humans. Although the mutation rate is limited, recently …

Evolution of plant telomerase RNAs: farther to the past, deeper to the roots

P Fajkus, A Kilar, ADL Nelson, M Holá… - Nucleic acids …, 2021 - academic.oup.com
The enormous sequence heterogeneity of telomerase RNA (TR) subunits has thus far
complicated their characterization in a wider phylogenetic range. Our recent finding that land …

An RNA-centric global view of Clostridioides difficile reveals broad activity of Hfq in a clinically important gram-positive bacterium

M Fuchs, V Lamm-Schmidt, J Sulzer… - Proceedings of the …, 2021 - National Acad Sciences
The gram-positive human pathogen Clostridioides difficile has emerged as the leading
cause of antibiotic-associated diarrhea. However, little is known about the bacterium's …

An RNA pseudoknot mediates toxin translation and antitoxin inhibition

A Eleftheraki, E Holmqvist - Proceedings of the National Academy of …, 2024 - pnas.org
Type I toxin–antitoxin systems (T1TAs) are bipartite bacterial loci encoding a growth-
inhibitory toxin and an antitoxin small RNA (sRNA). In many of these systems, the …