The interplay of epigenetic marks during stem cell differentiation and development

Y Atlasi, HG Stunnenberg - Nature Reviews Genetics, 2017 - nature.com
Chromatin, the template for epigenetic regulation, is a highly dynamic entity that is constantly
reshaped during early development and differentiation. Epigenetic modification of chromatin …

Epigenetic control of CD8+ T cell differentiation

AN Henning, R Roychoudhuri, NP Restifo - Nature Reviews …, 2018 - nature.com
Upon stimulation, small numbers of naive CD8+ T cells proliferate and differentiate into a
variety of memory and effector cell types. CD8+ T cells can persist for years and kill tumour …

A novel FLI1 exonic circular RNA promotes metastasis in breast cancer by coordinately regulating TET1 and DNMT1

N Chen, G Zhao, X Yan, Z Lv, H Yin, S Zhang, W Song… - Genome biology, 2018 - Springer
Background Friend leukemia virus integration 1 (FLI1), an ETS transcription factor family
member, acts as an oncogenic driver in hematological malignancies and promotes tumor …

The three-dimensional organization of mammalian genomes

M Yu, B Ren - Annual review of cell and developmental biology, 2017 - annualreviews.org
Animal development depends on not only the linear genome sequence that embeds millions
of cis-regulatory elements, but also the three-dimensional (3D) chromatin architecture that …

Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping

SL Morgan, NC Mariano, A Bermudez… - Nature …, 2017 - nature.com
Chromatin looping is key to gene regulation, yet no broadly applicable methods to
selectively modify chromatin loops have been described. We have engineered a method for …

The role of chromosome domains in shaping the functional genome

T Sexton, G Cavalli - Cell, 2015 - cell.com
The genome must be highly compacted to fit within eukaryotic nuclei but must be accessible
to the transcriptional machinery to allow appropriate expression of genes in different cell …

The 3D genome in transcriptional regulation and pluripotency

DU Gorkin, D Leung, B Ren - Cell stem cell, 2014 - cell.com
It can be convenient to think of the genome as simply a string of nucleotides, the linear order
of which encodes an organism's genetic blueprint. However, the genome does not exist as a …

Chromatin dynamics during cellular reprogramming

E Apostolou, K Hochedlinger - Nature, 2013 - nature.com
Induced pluripotency is a powerful tool to derive patient-specific stem cells. In addition, it
provides a unique assay to study the interplay between transcription factors and chromatin …

Long noncoding RNAs: an emerging link between gene regulation and nuclear organization

S Quinodoz, M Guttman - Trends in cell biology, 2014 - cell.com
Mammalian genomes encode thousands of long noncoding RNAs (lncRNAs) that play
important roles in diverse biological processes. As a class, lncRNAs are generally enriched …

Ground rules of the pluripotency gene regulatory network

M Li, JCI Belmonte - Nature Reviews Genetics, 2017 - nature.com
Pluripotency is a state that exists transiently in the early embryo and, remarkably, can be
recapitulated in vitro by deriving embryonic stem cells or by reprogramming somatic cells to …