The dynamism of transposon methylation for plant development and stress adaptation

M Ramakrishnan, L Satish, R Kalendar… - International Journal of …, 2021 - mdpi.com
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …

A devil's bargain with transposable elements in plant pathogens

S Fouché, U Oggenfuss, E Chanclud, D Croll - Trends in Genetics, 2022 - cell.com
Transposable elements (TEs) spread in genomes through self-copying mechanisms and are
a major cause of genome expansions. Plant pathogens have finely tuned the expression of …

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

YK Gupta, FC Marcelino-Guimarães, C Lorrain… - Nature …, 2023 - nature.com
With> 7000 species the order of rust fungi has a disproportionately large impact on
agriculture, horticulture, forestry and foreign ecosystems. The infectious spores are typically …

A highly polymorphic effector protein promotes fungal virulence through suppression of plant‐associated Actinobacteria

NC Snelders, JC Boshoven, Y Song, N Schmitz… - New …, 2023 - Wiley Online Library
Plant pathogens secrete effector proteins to support host colonization through a wide range
of molecular mechanisms, while plant immune systems evolved receptors to recognize …

Epigenetic regulation of nuclear processes in fungal plant pathogens

HM Kramer, DE Cook, MF Seidl… - PLoS Pathogens, 2023 - journals.plos.org
Through the association of protein complexes to DNA, the eukaryotic nuclear genome is
broadly organized into open euchromatin that is accessible for enzymes acting on DNA and …

The CERV protein of Cer1, a C. elegans LTR retrotransposon, is required for nuclear export of viral genomic RNA and can form giant nuclear rods

B Sun, H Kim, CC Mello, JR Priess - PLoS Genetics, 2023 - journals.plos.org
Retroviruses and closely related LTR retrotransposons export full-length, unspliced genomic
RNA (gRNA) for packaging into virions and to serve as the mRNA encoding GAG and POL …

How to completely squeeze a fungus—advanced genome mining tools for novel bioactive substances

A Schüller, L Studt-Reinhold, J Strauss - Pharmaceutics, 2022 - mdpi.com
Fungal species have the capability of producing an overwhelming diversity of bioactive
substances that can have beneficial but also detrimental effects on human health. These so …

Using structural variants to understand the ecological and evolutionary dynamics of fungal plant pathogens

FE Hartmann - New Phytologist, 2022 - Wiley Online Library
Deletions, duplications, insertions, inversions and translocations are commonly referred to
as structural variants (SVs). Fungal plant pathogens have compact genomes, facilitating the …

Genetic co-option into plant–filamentous pathogen interactions

J Macquet, S Mounichetty, S Raffaele - Trends in Plant Science, 2022 - cell.com
Plants are engaged in a coevolutionary arms race with their pathogens that drives rapid
diversification and specialization of genes involved in resistance and virulence. However …

Effects of Wolbachia on Transposable Element Expression Vary Between Drosophila melanogaster Host Genotypes

AT Eugénio, MSP Marialva… - Genome biology and …, 2023 - academic.oup.com
Transposable elements (TEs) are repetitive DNA sequences capable of changing position in
host genomes, thereby causing mutations. TE insertions typically have deleterious effects …