LNCcation: lncRNA localization and function

MC Bridges, AC Daulagala, A Kourtidis - Journal of Cell Biology, 2021 - rupress.org
Subcellular localization of RNAs has gained attention in recent years as a prevalent
phenomenon that influences numerous cellular processes. This is also evident for the large …

The mechanisms of integral membrane protein biogenesis

RS Hegde, RJ Keenan - Nature reviews Molecular cell biology, 2022 - nature.com
Roughly one quarter of all genes code for integral membrane proteins that are inserted into
the plasma membrane of prokaryotes or the endoplasmic reticulum membrane of …

Standardized annotation of translated open reading frames

JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet… - Nature …, 2022 - nature.com
To the Editor—Ribosome profiling (Ribo-seq) has extended our understanding of the
translational 'vocabulary'of the human genome, uncovering thousands of open reading …

MitoCarta3. 0: an updated mitochondrial proteome now with sub-organelle localization and pathway annotations

S Rath, R Sharma, R Gupta, T Ast, C Chan… - Nucleic acids …, 2021 - academic.oup.com
The mammalian mitochondrial proteome is under dual genomic control, with 99% of proteins
encoded by the nuclear genome and 13 originating from the mitochondrial DNA (mtDNA) …

Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation

AD Brunner, M Thielert, C Vasilopoulou… - Molecular systems …, 2022 - embopress.org
Single‐cell technologies are revolutionizing biology but are today mainly limited to imaging
and deep sequencing. However, proteins are the main drivers of cellular function and in …

Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames

CL Sandmann, JF Schulz, J Ruiz-Orera, M Kirchner… - Molecular cell, 2023 - cell.com
All species continuously evolve short open reading frames (sORFs) that can be templated
for protein synthesis and may provide raw materials for evolutionary adaptation. We …

The plasticity of mRNA translation during cancer progression and therapy resistance

L Fabbri, A Chakraborty, C Robert, S Vagner - Nature Reviews Cancer, 2021 - nature.com
Translational control of mRNAs during gene expression allows cells to promptly and
dynamically adapt to a variety of stimuli, including in neoplasia in response to aberrant …

Identification of tumor antigens with immunopeptidomics

C Chong, G Coukos, M Bassani-Sternberg - Nature biotechnology, 2022 - nature.com
The identification of actionable tumor antigens is indispensable for the development of
several cancer immunotherapies, including T cell receptor–transduced T cells and patient …

Beyond the RNA-dependent function of LncRNA genes

T Ali, P Grote - Elife, 2020 - elifesciences.org
While long non-coding RNA (lncRNA) genes have attracted a lot of attention in the last
decade, the focus regarding their mechanisms of action has been primarily on the RNA …

A few good peptides: MHC class I-based cancer immunosurveillance and immunoevasion

D Dersh, J Hollý, JW Yewdell - Nature Reviews Immunology, 2021 - nature.com
The remarkable success of immune checkpoint inhibitors demonstrates the potential of
tumour-specific CD8+ T cells to prevent and treat cancer. Although the number of lives …